Template-based Modeling Results for KDPE_ECOLI

Submitted Primary Sequence

>Length 225
MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML
CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCEEEEECCEEEECCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML
431000021241013001100422102001021132002101332100000001014020020021025232000000002323201000020101010021010100000011002222233233210202201001211102124220200111020000003111210012100120011302321000100001014214523230200001211001013
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGYRFML
1	MUSTER	2oqrA	0.371	0.996	3.750	threading_1	ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE-
2	SPARKS	1ys6a	0.369	0.987	4.006	threading_2	SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMNDVPVCVLSARVD--DRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA-GGGPRLLHTVRGVGFVLRM
3	PROSPECT2	1ys6A	0.374	0.987	4.459	threading_3	SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMNDVPVCVLSARVD--DRVAGLEAGADDYLVKPFVLAELVARVKALLRRRSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLE-AGGGPRLLHTVRGVGFVLRM
4	PPA-I	2oqrA	0.371	0.996	4.253	threading_4	ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE-
5	HHPRED-l	2gwr_A	0.366	0.947	3.140	threading_5	-RRILVVDDDASLAE-LTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDL-LPG-NGIDVCRVLRADSGVPIV-LTAKTDTVDVVLGLESGADDYI-KPFKPKELVARVRARLRRNDDE--PAE-LSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYR--ADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAG-
6	HHPRED-g	2gwr_A	0.364	0.951	2.533	threading_6	-RRILVVDDDASLAE-LTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDL-LPG-NGIDVCRVLRADSGVPIV-LTAKTDTVDVVLGLESGADDYI-KPFKPKELVARVRARLRRNDDE--PAE-LSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYR--ADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGP
7	SP3	1ys6a	0.369	0.987	3.812	threading_7	SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMNDVPVCVLSARVD--DRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG-GPRLLHTVRGVGFVLRM
8	SAM-T99	2oqrA	0.372	0.991	3.551	threading_8	ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL--
9	MUSTER	1ys6B	0.372	0.991	3.572	threading_9	P-RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSTITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA-GGGPRLLHTVRGVGFVLRM
10	SPARKS	2gwra	0.353	0.956	3.712	threading_10	RQRILVVDDDASLAE-LTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLD-LLPG-NGIDVCRVLRADSGVPIVL-TAKTDTVDVVLGLESGADDYI-KPFKPKELVARVRARLRRNDDEPAE---LSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYR--ADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYKAGP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.604 to 1ys6B TM-score=0.647 to native SCOP code=a.4.6.1	TM-score=0.604 to 1ys6B TM-score=0.645 to native SCOP code=a.4.6.1	TM-score=0.948 to 1ys6B TM-score=0.919 to native SCOP code=a.4.6.1	TM-score=0.947 to 1ys6B TM-score=0.918 to native SCOP code=a.4.6.1	TM-score=0.608 to 1ys6B TM-score=0.643 to native SCOP code=a.4.6.1

Experimental Structure

Download 1zh2B

SCOP code=c.23.1.1