Template-based Modeling Results for ILVD_ECOLI

Submitted Primary Sequence

>Length 616
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG
CCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCHHHCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCEEEEECHHHHCCCCEEEEECCCEEEEECCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCCCCHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG
5543311213314320001000300103223021000000000110010101022003000210230110001010000110002012001000001200010010002011010000001002000000000030100000000001210313223211000002002201343122210210131101101001010000000000100100010101110212112200120021002002211332332010220011200100000000100010000000000240503010200220043010001002113301010014001000000001311000320100111102200230322223232011013102221322321233132322332422100110321224310000010100320000100113421020201010021121002002223022100000112014102201110200110232111310000011201211210000000020133010000110010101032210101012210121232232413322223333331120031002101112200222223125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFTQFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQIIKLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGNGSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIGILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFSQDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTGPAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELAARREAQDARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG
1	MUSTER	2gp4A	0.288	0.807	3.084	threading_1	------------------------------------HSVVQSVTDRISREAYLAALNDARNHLLKEVGSVAQVAGV--PCDGVTQGQPGE-LSLLSREVIAATAVGLS--HNFDGALLLGICDKIVPGLLIGALSFGHLPLFVPAGPG--------------------------KVDRAQLLEAEAQSYHSAGTCT--FYGQLL-----EVGLQLPGSSFVNPDDPLREALNKAAKQVCR------TELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNG-HADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELR-----WVDGPT--------------VSLDTE----VLTSVATPFQNNGGLKLLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKAGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEID-------LRHSRYGGRELFGVLRSNLSSPETGARST-SAIDE
2	SPARKS	2gp4a	0.287	0.810	10.105	threading_2	-----------------------------------HHSVVQSVTDRIIARSYLAALNDARNHLLKQEGSVAQVAGVPC--DGVTQGQPGE-LSLLSREVIAATAVGL--SHNFDGALLLGICDKIVPGLLIGALSFGHLPLFVPAGPG--------------------------KVDRAQLLEAEAQSYHSAGTC--TFYGQLLE-----VGLQLPGSSFVNPDDPLREALN-KAAKQVCRL----TELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNL-THIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNG-HADINHFHAAGGA-FLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELR-----WVDGP------------------TVSLDTEVLTSVATPFQNNGGLKLLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKAGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHSRYGG-------RELFGVLRSNLSSPETGARSTIDELY-
3	PROSPECT2	2gp4A	0.268	0.823	4.616	threading_3	----HHSVVQSVTDRIIARSKASR------------------EAYLAALNDARNHLLKQEVGSVAQVAGVP--------CDGVTQGQPGE-LSLLSREVIAATAVGL--SHNFDGALLLGICDKIVPGLLIGALSFGHLPLFVPAGP--------------------------GKVDRAQLLEAEAQSYHSAGTC-------TFYGQLLEVGLQLPGSSFVNPDDPLREALNKAAKQ-----VCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNG-HADINHFHAAGGAF-LIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDG-----------------------ELRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKAGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEI-------DLRHSRYGGRELFGVLRSNLSSPETGARSTSAIDLY
4	PPA-I	2gp4A	0.274	0.812	8.952	threading_4	-----------------------------------HHSVVQSVTDRISREAYLAALNDARNHLLQEVGSVAQVAGV--PCDGVTQGQPGE-LSLLSREVIAATAVGLSH--NFDGALLLGICDKIVPGLLIGALSFGHLPLFVPAGPGK--------------------------VDRAQLLEAEAQSYHSAGTCT--FYGQLL-----EVGLQLPGSSFVNPDDPLREALNKAAKQVCRL-----TELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGH-ADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDG-----------------------ELRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKAGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHSRYGGRE-------LFGVLRSNLSSPETGARSTSAIDEL
5	HHPRED-l	2gp4_A	0.305	0.782	10.625	threading_5	-HIARSKALNDARNH-------------------------------------------LLK---QEVGSVAQVAG-P--CDGVTQGQPG-ELSLLSREVIA-ATAVGLSHN-FDGALLLGICDKIVPGLLIGALSFHLP-LFVPAGP--------------------------GKVDRAQLLEAEAQSYHSAGTCTFYG--------LEV-GLQLPGSSFVNPDDPLREALNK-AAKQVCRLTE----LGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLT-HIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGH-ADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE-----------------------LRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKAN-G-PELHKLTPLLGSQDKGFKVAL-TDGR-SGASGKVAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRH------SRYG-GRELFGVLRSNLSSPETGARSTSAIDE-
6	HHPRED-g	2gp4_A	0.307	0.761	3.004	threading_6	RNH-------------------------------------------------------LLK---QEVGSVAQVAG-V--CDGVTQGQPG-ELSLLSREVIA-ATAVGLSHN-FDGALLLGICDKIVPGLLIGALSFHLP-LFVPAGP--------------------------GKVDRAQLLEAEAQSYHSAGTCTFYG--------LEV-GLQLPGSSFVNPDDPLREALNK-AAKQVCRL----TELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLT-HIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNG-HADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLD------------------------GELRWVGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKAN-G-PELHKLTPLLGSQDKGFKVAL-TDGR-SGASGKVAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTA--------TEIDLRHSRYGRELFGVLRSNLSSPETGARSTSA-IDE
7	SP3	2gp4a	0.286	0.812	1.624	threading_7	-----------------------------------HHSVVQSVTSKASREAYLAALNDARNHLLKEVGSVAQVAGVP--CDGVTQGQPGE-LSLLSREVIAATAVGL--SHNFDGALLLGICDKIVPGLLIGALSFGHLPLFVPAGPGK--------------------------VDRAQLLEAEAQSYHSAGTC--TFYGQLLE-----VGLQLPGSSFVNPDDPLREALN-KAAKQVCRL----TELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNL-THIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNG-HADINHFHAAGGA-FLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELR-----WVDGP--------------TVSLDTE----VLTSVATPFQNNGGLKLLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKAGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHSRYGG-------RELFGVLRSNLSSPETGARSTSAIDEL
8	SAM-T99	2gp4A	0.278	0.823	7.811	threading_8	HHSVVQSVTDRARSKASREAYLAALNDARNHLLKQEVG------------------------SVAQVAGVP--------CDGVTQGQPGEL-SLLSREVIAAT--AVGLSHNFDGALLLGICDKIVPGLLIGALSFGHLPLFVPAGP--------------------------GKVDRAQLLEAEAQSYHSAGTC-------TFYGQLLEVGLQLPGSSFVNPDDPLREAL-NKAAKQVCRLTE----LGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNGH-ADINHFHAAGGAFLI-KELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWVDGPTVS-----------------------LDTEVLTSVATPFQNNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKANG--PELHKLTPLLGSLQDKGFKVALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHSRYGGRELFGVLRSNLSSPETGARSTS--AIDELY----
9	MUSTER	2gp4A1	0.282	0.552	1.768	threading_9	------------------------------------HSVVQSVTDRISREAYLAALNDARNHLLKEVGSVAQVAGVP--CDGVTQGQPGE-LSLLSREVIAATAVGLS--HNFDGALLLGICDKIVPGLLIGALSFGHLPLFVPAGPG--------------------------KVDRAQLLEAEAQSYHSAGTCT--FYGQLL-----EVGLQLPGSSFVNPDDPLREALNKAAKQVCR------TELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIVNWDDFSELSDAVPLLARVYPNG-HADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELR-----WVDGPT--------------VSLDTE----VLTSVATPFQNNGDLGVLRSNLSSPETGARSTSAIDELY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	1aco_	0.183	0.877	0.770	threading_10	LDDPANQEIERGKTAQMAMLQFISSGLP-----KVAVPSTIHCDHLIEAQLGAKDINQEVYNFLATAG---AKYGVGFWRPGSGIIHQIILYAYPGVLLITDSHTPNGGGL---GGICIG----VGGADAVDVM---------AGIPWELKCPSLSGWTSPKDVILKVAGIGTGAIHGPGVDSI---------SCTGMATICNM--GAEI-G----ATTSVFPYNHRMKKYLSKTGADIANLADEFKDHTPDLAHPVAEVGSVAEKEGWPLDILIGSCTNSSYEDMGRSAAV-----AKQALAHGLKCKSQFTITPGSEQ--IRATIERDGYAQVLRDVIKKGEKNPETHAFVTGTLKFNPETDFLTGKDAPDADELPRAEDPGQDTYQHPPKDSSGQRVDVSPTSQRLQLLEPFDKWDGKLIKVKGKCTTDGPWLKFRGHLDNISNNLLIGAINQEFGPVPDTARYYKQHGIRWVVI--GDENYGEGSREH----SALEPRFLG--GRAIITKSFARKKQGLLPLTFADPADYNK----IHPVDKLTIQGPGKPLTCII------------KHPNGTQETILLNHTFNETQIEWFRA--GSALNRMKELQQK---

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.861 to 2gp4A SCOP code=c.8.2.2	TM-score=0.867 to 2gp4A SCOP code=c.8.2.2	TM-score=0.864 to 2gp4A SCOP code=c.8.2.2	TM-score=0.880 to 2gp4A SCOP code=c.8.2.2	TM-score=0.863 to 2gp4A SCOP code=c.8.2.2