Template-based Modeling Results for HOFC_ECOLI

Submitted Primary Sequence

>Length 400
MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG
CCCCCEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG
5543110201011341210201020322210120035231100102221132232313201200210020041201012001101332323302200210031033122002002201310130000002002311302200220031131133103302301310000000000000001210002002004313231220020000002000200000000000000002111222200100110012000001001001001001000000202020120020023113121012002201200221220020033023113100100200231120320022003202310220021002101000000000000000011000002102112324
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG
1	PROSPECT2	1jdha	0.106	0.943	1.668	threading_1	AVVNL--------------IRAIPSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLLAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG-----GLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVQNCLWTLRNLSEGLLGTLVVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVREDITEPAICALRHLTSRHQEAEMAQNAVRLHPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFMEEIVEGCTVHNRIVIRGLIPLFVQLLENIQRVAAGVLCELAQDKEAAEAIYAAAVLFRMS
2	SPARKS	2whna	0.345	0.275	3.026	threading_2	---------------------------------------------VRIPALERGPGLKDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHK-IFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1w63A	0.092	0.980	1.664	threading_3	MPAPIRLRRSSFREEDN--------TYRCRNLLYMHMLGYPAHFGQLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYALCAVHVIRKVPELMEMFLPATKNLLNLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLSLLKTVQTDAVQRHRSTIVDCLKDLDVKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPIFLAAEKYAPSKRWHIDTIMGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVIMKLSTRFT
4	PPA-I	2vmbA	0.248	0.302	1.710	threading_4	-----------------------------------------------GFAFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQASENLYF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1b3ua	0.082	0.978	1.654	threading_5	AAA---------DGDDSLYSTIALALGVERTRSFLTDTIYDEDEVLLATFTTLVGGPEYVHCLLPPLESLATVEETAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTGLFSVCYPRVSSELRQYFRNLCSDDTPMAAASKLGEFAKELDNVKSEIIPMFSNLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKELPCIKELVKDNTIEHLLPLFLAQLKDECPIISNLDCVNEVIGIRQLSQSLLPAIVELAEDPLLAGQLGVEFFDEKLNSLCMAWLVDHVAATSNLKKLVEKFGKEWDITTKHMLPTVLRMAVRFNVAKSLQKIGPILDNSTLQSEVKPSLA
6	HHPRED-l	3c1q_A	0.261	0.278	4.678	threading_6	------------------------------------------------FAFKRGISTPDLALITRQLATLVQSG-PLEECLRAVAEQSEKPRIRT-LVAVRAKVTEGYTLSDSLGDYPHVFDELFRS-VAAGEKSGHLDSVLERLADYAENRQK-RSKLQQAS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	3a6pA1	0.085	0.915	1.622	threading_7	AMDQ-------------------VNALCEQLVKAVTV------------MMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAILKNSVMELIANGTLNILLSRIVREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLQRRRDIQQTLTQNMERIFSFLLNTLQENVNANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLNQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSARLCQVLCALGNQLCTPSNFGKYLESFLAFTTHQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTF-
8	HHPRED-g	3c1q_A	0.261	0.278	4.353	threading_8	------------------------------------------------FAFKRGISTPDLALITRQLATLVQSG-PLEECLRAVAEQSEKPRIRT-LVAVRAKVTEGYTLSDSLGDYPHVFDELFRS-VAAGEKSGHLDSVLERLADYAENRQK-RSKLQQAS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3m1iC	0.109	0.940	0.850	threading_9	MVRPEEVL-VVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL---------NVIDTEEIMISKLARQIDGSEWLSWAIGSISGTMSEDTEKRFVVTVIKDLLD---LTV----KKRGKDNKAVVASDIMYVVGQYPRFLKA---HWNFLRTVILKLFEFMHETEGVQDMACDTFIKIVQKCKYHF--VIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPLLLDSETVKIIANIIKTNVAVCTSGADFYPQLGHIYYNM-LQLYRAVSSMISAQVAAGLIATPKVRGLRTIKKEILKLVET-SKARNLDDVVKVLVEPLLNAVLEDYMNVPDARDAEVLNCMTTVVEKVMIPQGVILICTLDMINDFT
10	SP3	2whna	0.327	0.275	2.825	threading_10	------------------------------------------VRI---PALERGPGLKDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHK-IFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.560 to 1wa5B SCOP code=a.118.1.1	TM-score=0.376 to 1r5zA SCOP code=f.40.1.1	TM-score=0.753 to 1w63C SCOP code=i.23.1.1	TM-score=0.377 to 1et1A SCOP code=j.15.1.1	TM-score=0.693 to 1b3uA SCOP code=a.118.1.2