Template-based Modeling Results for GNTK_ECOLI

Submitted Primary Sequence

>Length 175
MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKGK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKGK
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKGK
5543433210000000110010000110022020200100000233102211222201331132002000200111232231000002122320120033023200000020213102100332422223231011102312322233210000113311310021012114425
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKGK
1	MUSTER	1ko5A	1.000	0.983	3.212	threading_1	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKG-
2	SPARKS	1knqa	1.000	0.977	3.854	threading_2	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK--
3	PROSPECT2	1knqa	1.000	0.977	2.760	threading_3	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK--K
4	PPA-I	1ko5A	1.000	0.983	3.142	threading_4	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKKG-
5	HHPRED-l	1knq_A	1.000	0.977	2.024	threading_5	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK--
6	HHPRED-g	1knq_A	1.000	0.977	2.298	threading_6	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK--
7	SP3	1knqa	1.000	0.977	4.012	threading_7	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK--
8	SAM-T99	1ko5A	1.000	0.971	3.980	threading_8	--TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIK---
9	MUSTER	3t61A	0.407	0.926	2.349	threading_9	-----RRFPGSIVVGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKS-EGIPLTDDDRWPWLAAIGERLAS----REPVVVSCSALKRSYRDKLRESAPGLAFVFLHGSESVLAERH-HRTGHF-PSSLLQTQLETLEDPR-GEVRTVAVDVAQPLAEIVREALAGLARHH
10	SPARKS	3t61a	0.407	0.926	2.830	threading_10	-----RRFPGSIVVGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKS-EGIPLTDDDRWPWLAAIGERL----ASREPVVVSCSALKRSYRDKLRESAPGLAFVFLHGSESVLAERHH-RTGHF-PSSLLQTQLETLEDPR-GEVRTVAVDVAQPLAEIVREALAGLARLA

Predicted Tertiary Structure


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TM-score=0.990 to 1ko5A TM-score=0.999 to native SCOP code=c.37.1.17	TM-score=0.990 to 1ko5A TM-score=0.999 to native SCOP code=c.37.1.17	TM-score=0.934 to 1ko5A TM-score=0.942 to native SCOP code=c.37.1.17	TM-score=0.935 to 1ko5A TM-score=0.943 to native SCOP code=c.37.1.17	TM-score=0.990 to 1ko5A TM-score=0.999 to native SCOP code=c.37.1.17

Experimental Structure

Download 1ko5A

SCOP code=c.37.1.17