Template-based Modeling Results for LCFA_ECOLI

Submitted Primary Sequence

>Length 561
MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA
CCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCHHHCCCHHHHHHHHCCCCEECCCEEEECCCCCEEEEECCCCEEEECCEEECHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA
552101221223022312133231001001200331131200001111000220121020002100311203401100000110220000000002000000100111122001200230201000002200300130133121210000210221222312112100211331123221231010210023134233242312330000000001122201001000100000011011011222232321000000000000000000000110010000013220310021023210000000000000002023134210010000000002023200220141110200100001200100000232232210000100110101001333230231210100020110010103212001100430000000000004300010011221000010000002101200140220010000102133212101000023433122300020034203203012101012401313201000220133032313444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA
1	MUSTER	1mdfA	0.243	0.930	3.584	threading_1	MLTPWPDELAETYRKNGCW-AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKL--IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYRSLARQVQSKLPLKNIIVAG---------------------------EAEEFLPLEDLHTEPVKL----PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW---LDHSTVYLAALPMAHNYPLSPGVLGVLYAGGRVVLSPSP-SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA-G
2	SPARKS	3b7wa	0.252	0.927	4.422	threading_2	-----LQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNLMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLL------------------------VSEKSCDGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTG---LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ-DLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLADPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK------
3	PROSPECT2	3a9uA	0.287	0.914	5.563	threading_3	-EFIFRSKLPD-----IYIPKNLPLHSYVLENLSNHSSKPCLINNGDVYTYADVELTARRVASGLNK-IGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFAR-EDVKVMCVDSAPD---------------------------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPK-FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSE---LEDTVRAKF---PQARLGQGYGMTEAGPVLAMCLAFADIKPGACGTVVRNAEMKIVDPEGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL-----AGI
4	PPA-I	1mdfA	0.246	0.943	4.967	threading_4	MLKPWPDELAETYRKNGCW-AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLA---------RQVQSKLPTLKNIIV------------AGEAEEFLPL----EDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW---LDHSTVYLAALPMAHNYPLSPGVLGVLYAGGRVVLSPSP-SPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG-
5	HHPRED-l	1pg4_A	0.210	0.950	3.368	threading_5	PDTFWGEPYQKGNIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAVDDALKNPSVEHVIVLKRTG-------------------SDIDWQEGRDLW-WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV--FDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFENWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGCPVVDTWWQTETGGFMITPPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSGQARTLFGDHERFEQTYFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEPSPAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD-----
6	HHPRED-g	2d1s_A	0.285	0.930	2.671	threading_6	------DENIVVGPKPFYPIEEGSAGTQLRKYMERYAKLGAIAFTGVDYSYAEYLEKSC-LGKALQN-YGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTTTIKTIVILDS--KVDY----------------------RGYQCLDTFIKRNTPSSFTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF-TTLGYLICGFRVVML-TKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLGVRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLEGKNMTEKEVMDYVASQVSNAKRRGGVRFVDEVPKGLTGKIDGRAIREILKKPV----
7	SP3	3a9ua	0.291	0.913	4.447	threading_7	-EFIFRSKLP-----DIYIPKNLPLHSYVLENLSNHSSKPCLIANGDVYTYADVELTARRVASGLNK-IGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKV-KDFAREDVKVMCVDSAPD---------------------------GCLHFSE-LTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPK-FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIK---SELEDTVRAKFP---QARLGQGYGMTEAGPVLAMCLAPFDIKPGACGTVVRNAEMKIVDPEGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL------AG
8	SAM-T99	3a9uA	0.287	0.914	3.736	threading_8	EFIFRSKLPDIYIPKNLP------LHSYVLENLSNHSSKPCLGANGDVYTYADVELTARRVASGLNK-IGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARED-----------------------------VKVMCVDSAPDGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPK-FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKS---ELEDTVRAKFPQA---RLGQGYGMTEAGPVLAMCLAFFDIKPGACGTVVRNAEMKIVDPEGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAGI-----
9	MUSTER	1ba3A	0.269	0.941	3.579	threading_9	-DA---KNIKKG-PAPFYPLEDGTAGEQLHKAMKRYPGTIAFTDIEVNITYAEYFEMSVRLAEAMKRY--LNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEY------------------DFVPESFDRDK-TIALIMNSSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC--FRVVLM-YRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLGIRQGYGLTETTSAILITPEG-DDKPGAVGKVVPFFEAKVVDLDGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEGKTMTEKEIVDYVASQVTTAKKLGGVVFVDEVPKGLTGKLDARKIREILIKAKK---
10	SPARKS	3c5ea	0.251	0.923	4.410	threading_10	-------QWGHEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNLMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLL------------------------VSEKSCDGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGL---QASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLADPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.951 to 1mdfA SCOP code=e.23.1.1	TM-score=0.961 to 1mdfA SCOP code=e.23.1.1	TM-score=0.830 to 1pg3B SCOP code=e.23.1.1	TM-score=0.777 to 1ba3A SCOP code=e.23.1.1	TM-score=0.961 to 1mdfA SCOP code=e.23.1.1