Template-based Modeling Results for DPPC_ECOLI

Submitted Primary Sequence

>Length 300
MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
544223332222322211012002103522010001000000000012132002101211001111111123311112010001210110000001001101110011101011001010100111100001000100200100010000000011112200000000000000100000111012101210010041110110100001000100000001000000100000000000110031110300100110130022011100000000000000010001001211123244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLFIAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKLKQ
1	MUSTER	3dhwA	0.197	0.627	1.098	threading_1	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTGQKLYRTVSAIVNIFRSIPFIILLVWMIPFTSIGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYGYINATVMNTVLVLLVILVYLIQFAGD------------
2	SPARKS	3dhwa	0.191	0.627	1.951	threading_2	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYGYIGATVMNTVLVLLVILVYLIQFAGD------------
3	PROSPECT2	1ezfa	0.086	0.930	1.363	threading_3	----------------NSLKTCYKYLNQDGEMRNAVCIFYLVLRALDTLEDDMTISVEK--KVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGTERANSMGLFLQKTNIIRYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAAYNNQQVFKGPAVKAIIYQY---MEEIYHRIPDSDQN
4	PPA-I	3dhwA	0.191	0.627	4.730	threading_4	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPKLYRTVSAIVNIFRSIPFIILLVWMIPFTSIGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYGYINATVMNTVLVLLVILVYLIQFAGD------------
5	HHPRED-l	3tui_A	0.187	0.677	5.073	threading_5	-------------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTNAKLYRTVSAIVNIFRSIPFIILLVWMIPFTGIGLQAAIVPLTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG------GLGQIGYQYG-YIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR----
6	HHPRED-g	3tui_A	0.182	0.677	4.853	threading_6	-------------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTNAKLYRTVSAIVNIFRSIPFIILLVWMIPFVSIGLQAAIVPLTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG------GLGQIGYQYG-YIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR----
7	SP3	3dhwa	0.202	0.627	1.608	threading_7	------------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTGQKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVGLQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG--------G-LGQIGYQYGYINATVMNTVLVLLVILVYLIQFAGD------------
8	SAM-T99	3dhwA	0.185	0.650	1.284	threading_8	-------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRT----------------------------------------------------------------VSAIVNIFRSIPFIILLVWMIPFTRVIVGTAIVPLTVGAAPFIARMVENALLEIP-TGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG---------GLGQIGYQYIGYNATVMNTVLVLLVILVYLIQFAGD------------
9	MUSTER	2onkC	0.153	0.763	1.027	threading_9	-----------------------------MRLLFSALLALLSSIILLF--------PVAATVTLQLF--------NFDEFL-SD-------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSALPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA-Y---YPMIAPTLIYERYLSEGLSAPVAAILILLSLAVFVALRIIG-------------
10	SPARKS	2onkc	0.144	0.763	1.870	threading_10	---------------------------------------MRLLFSALLA-------LLSSIILLFVLLPVTLQLFNFDEFAASD-------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSALPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIA----YYPMIAPTLIYERYLSEGLSPVAAILILLSLAVFVALRIIVG-------------

Predicted Tertiary Structure


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TM-score=0.746 to 3dhwA SCOP code=f.58.1.1	TM-score=0.756 to 3dhwA SCOP code=f.58.1.1	TM-score=0.746 to 3dhwA SCOP code=f.58.1.1	TM-score=0.835 to 1ezfB SCOP code=a.128.1.2	TM-score=0.747 to 3dhwA SCOP code=f.58.1.1