Template-based Modeling Results for DLGD_ECOLI

Submitted Primary Sequence

>Length 332
MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL
CEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL
22021320220013002212022300200020002021111211001101100210332311231202012221000001032000000022002200210241100000011011101000001100331000000010111101221321200000000001223100000000000100011023223301230001331221311111242210000121300000000000000003111123123332331000000000003201303101210230021023033134322010112321111120343202013200220342
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL
1	MUSTER	1x0aA	0.238	0.988	3.059	threading_1	MRWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLPVYVRRLEAGLVNPSPTLPLEER-GPVALLDGEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGFVAWVTTNAEPDVVPFGGREKALGTNPLAFAAPAPQILVADLATSESAMGKVFLAREKGERIPPSWGVDREGSPTDDPHRV---YALRPLGGPKGYALALLVEVLSGVLTGAGVAGRMYDEWDRPQDVGHFLLALDPGRFVGKEAFLERMGALWQALKATPPAPGHEEVFLPGELEARRRERALAEGMALPERVVAELKAL
2	SPARKS	1vbia	0.238	0.988	6.094	threading_2	MRWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLPVYVRRLEAGLVNPSPTLPLEER-GPVALLDGEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGFVAWVTTNAEPDVVPFGGREKALGTNPLAFAAPAPQILVADLATSESAMGKVFLAREKGERIPPSWGVDREGSPTDDPHRVY---ALRPLGGPKGYALALLVEVLSGVLTGAGVAHGIYDEWDRPQDVGHFLLALDPGRFVGKEAFLERMGALWQALKATPPAPGHEEVFLPGELEARRRERALAEGMALPERVVAELKAL
3	PROSPECT2	3i0pA	0.238	1.000	4.989	threading_3	KNVSIDTIKEFMYQVLLKVGSDEENARMVRDTLIAADLRGMDTHGIQRFKTVIDRIKKGMINPTAKPSIIRETSTTCVLDGNNGFGHVNGTIGMKMAIEKAKKYGMGMVVVRNSTHFGIAGYYSLLAAQEGCIGICGTNARSSVAATFGDEPILGTNPLAIGIPSDFPYCFDGATSISPTGRFEKYVRMGKTVDKSWASMKGGKPIEDPKELLEGGSDEVSGSHKGYCLSEFVEIMSSCLSIANFLNHIEEEKSGKFSLGHFFIAINVECFRDLNEFKKNVGDINRTLRNTDKLPGHDRIYTAGEKEYETEQKRRKFGDDLPLVTINEMKEL
4	PPA-I	1x0aA	0.238	0.988	4.594	threading_4	MRWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLPVYVRRLEAGLVNPSPTLPLEE-RGPVALLDGEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGFVAWVTTNAEPDVVPFGGREKALGTNPLAFAAPAPQILVADLATSESAMGKVFLAREKGERIPPSWGVDREGSPTDDPHRV---YALRPLGGPKGYALALLVEVLSGVLTGAGVAHGIYDEWDRPQDVGHFLLALDPGRFVGKEAFLERMGALWQALKATPPAPGHEEVFLPGELEARRRERALAEGMALPERVVAELKAL
5	HHPRED-l	1nxu_A	1.000	0.949	4.781	threading_5	-KVTFEQLKAAFNRVLISRGVDSETADACAE-FARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKK--DRAIELAADHGIGLVALRNANHW-RGGSYGWQAAEKGYIGICWTNSIAV-PPWGAKECRIGTNPLIVAIPSTPIT-VD-S---FSYG-LEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILP-GYWKGSG-SIVLD-IATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRI-DYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQA-
6	HHPRED-g	1nxu_A	1.000	0.952	3.901	threading_6	-KVTFEQLKAAFNRVLISRGVDSETADACAE-FARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKK--DRAIELAADHGIGLVALRNANHW-RGGSYGWQAAEKGYIGICWTNSIAV-PPWGAKECRIGTNPLIVAIPSTPIT-VD-S---FSYG-LEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILP-GYWKGSG-SIVLD-IATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRI-DYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL
7	SP3	1vbia	0.238	0.988	6.228	threading_7	MRWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLPVYVRRLEAGLVNPSPTLPLEER-GPVALLDGEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGFVAWVTTNAEPDVVPFGGREKALGTNPLAFAAPAPQILVADLATSESAMGKVFLAREKGERIPPSWGVDREGSPTDDPHRVY---ALRPLGGPKGYALALLVEVLSGVLTGAGVAHGIYDEWDRPQDVGHFLLALDPGRFVGKEAFLERMGALWQALKATPPAPGHEEVFLPGELEARRRERALAEGMALPERVVAELKAL
8	SAM-T99	1x0aA	0.238	0.988	4.950	threading_8	MRWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLPVYVRRLEAGLVNPSPTLP-LEERGPVALLDGEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGFVAWVTTNAEPDVVPFGGREKALGTNPLAFAAPPQGILVADLATSESAMGKVFLAREKGERIPPSWGVDREGSPTDDPHRV---YALRPLGGPKGYALALLVEVLSGVLTGAGVAHGIGRMYDEPQDVGHFLLALDPGRFVGKEAFLERMGALWQALKATPPAPGHEEVFLPGELEARRRERALAEGMALPERVVAELKAL
9	MUSTER	2cwhB	0.252	0.979	3.037	threading_9	QTVSYPQLIDLLRRIFVVHGTSPEVADVLAENCASAQRDGSHSHGIFRIPGYLSSLASGWVDGKAVPVVEDVGAAFVRVDACNGFAQPALAAARSLLIDKARSAGVAILAIRGSHHFAALWPDVEPFAEQGLVALSMVNSMTCVVPHGARQPLFGTNPIAFGAPRGEPIVFDLATSAIAHGDVQIAAREGRLLPAGMGVDRDGLPTQEPRAILDGGALLPFGGHKGSALSMMVELLAAGLTGGNFSFEFKHPGAQTPWTGQLLIVIDPDKGAG-QHFAQRSEELVRQLHG------VGQERLPGDRRYLERARSMAHGIVIAQADLERLQEL
10	SPARKS	1z2ia	0.266	0.997	5.996	threading_10	VLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLLAHYVTALEGGRLNRRPQISRVSGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGYIGLAFCNSDSFVRLHDGAMRFHGTNPIAVGVPAADPWLLDMATSAVPYNRVLLYRSLGQQLPQGVASDGDGVDTRDPNAVEMLAPVGGEFGFKGAALAGVVEIFSAVLTGMRLSFDLAPDFSTPRGLGAFVLALKPEAFLERDVFDESMKRYLEVLRGSPAREDC-KVMAPGDREWAVAAKREREGAPVDPVTRAAFSEL

Predicted Tertiary Structure


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TM-score=0.886 to 1xrhC TM-score=0.911 to native SCOP code=c.122.1.1	TM-score=0.870 to 1xrhC TM-score=0.854 to native SCOP code=c.122.1.1	TM-score=0.922 to 1xrhC TM-score=0.883 to native SCOP code=c.122.1.1	TM-score=0.885 to 1s20G TM-score=0.903 to native SCOP code=c.122.1.1	TM-score=0.889 to 1xrhC TM-score=0.915 to native SCOP code=c.122.1.1

Experimental Structure

Download 1nxuA

SCOP code=c.122.1.1