Template-based Modeling Results for COBS_ECOLI

Submitted Primary Sequence

>Length 247
MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
2032010000000200013312321223101200100000000000000000000311011100000000000000000001000000100012313320120131031001000000000001000002012212100000000000000000000110320334120211123231331000000000000011100100000000000000001001320200001001000100100000112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
1	PROSPECT2	3a0oA3	0.117	0.972	1.314	threading_1	NHCGWAEFYPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAEAGFRVVVALAWGYDWLYDHLSEDERRTVRS-------VLLERTREVADHVIHAVRSLSAVLTPACIALAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMYNYGWWDLNFDDLVYRHDY
2	PROSPECT2	2bkuB2	0.096	0.972	1.305	threading_2	TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS--LGKGFEKYLETF-----SPYLLKALNQVDSPVSITAVGFIADISNSNVLAQMISNPPAVLSVFNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAWVIDYI
3	PROSPECT2	1ee4a	0.109	1.000	1.282	threading_3	QLSATVKFRQILSREHRPPFMRENQPEMLQLEAAWALWALGNVAGDSTDYRDYVLQCNAKPSLIRTATWTLSNLCRGWSVVSQALPTLAKLIYSMDTETLVDACWASDGPQEAIQAVIDVQTPALRAVGNIVTGNDLQTQVVINAGVLPKKEACWTISNITAGNTEQIQAVIDANLVAEDKTKKEACWAISNASSGGLNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ
4	PROSPECT2	3swhA	0.120	0.947	1.252	threading_4	VFSQLNQSFEIIKKLECP-------DPQIVGHYMRRFATISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVKSVAQDADNVLQPIMDLL------DSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLY
5	PROSPECT2	3kb9A	0.095	0.935	1.237	threading_5	YWPKLQTTRTWLLEKRLMPGYYLGAPDEVLQAIADYS-----AWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHAGFADSVRRLYAFLPATWNARFAR-------HFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCE----LPDAVRKHPAYRRAALLSQEFAAWYNDLCSLRRRVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNW
6	MUSTER	3a0oA	0.116	0.976	0.790	threading_6	WAEFYEKSVEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAAGATSVVALAWGYDWLYDHLSEDERRTVRS---VLLERTREVADHVIAHSHAVRSLSAVLTPACIALDEAGEWLDYTVEFLATLYPWAGTDGGWA---EGPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGTRRANFGDDLPGLKLGYNVRQFAGVT
7	SPARKS	2xwub	0.113	0.972	0.969	threading_7	YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLPVM------INSVLPLVLHALGNPELSVSSVSTLKKICRECKYAANIVAVSQDVLMKQKTSQCMWLMQASALQVEEILKNLHSLISPIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHPNPQLIQKVLSKWLNAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSSALDLTRQLVHIFA-HEPAHFPPIEALFLLVTSVTLT
8	PROSPECT2	1ejlI	0.118	0.992	1.225	threading_8	QLQATQAARKLLSREKQPPILGKTDCSPIQFESAWALWALGNIAGDGSAFRDLVIKHGAIDPLCGYLRNLTWTLSNPLDAVEQILPTLVRLLHHNDPEVLADISYLTDGPNERIEMVVPIVTPALRAIGNIVTGTDEQTQKVIDAGALAQKEATWTMSNITAGRQDQIQQVVNHGLKADFKTQKEAAWAITNYTSGGTVEQIVYLVIIQVILDAISNIFQAAEK--LGETEKLSIMIEECGGLDKIE
9	PPA-I	1pw4A2	0.105	0.769	0.938	threading_9	NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM------------NPAGNPTVDMICM-----IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV---------GYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------------------------------
10	HHPRED-l	1m0f_B	0.204	0.198	0.745	threading_10	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-------------------QLTKNQRK------KRDEIEAGKSYCSRRFGGATCDDKSAQIQPAEFYRFHDE-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.396 to 1xl7B SCOP code=c.43.1.3	TM-score=0.570 to 1j0nA SCOP code=a.102.3.2	TM-score=0.456 to 1pw4A SCOP code=f.38.1.1	TM-score=0.722 to 3ea5B SCOP code=a.118.1.1	TM-score=0.576 to 1ialA SCOP code=a.118.1.1