Template-based Modeling Results for CCMB_ECOLI

Submitted Primary Sequence

>Length 220
MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ
CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ
2200110112010102322210100000000000011211222300030010000000000000002300221142000110100211110000010001001100010000100000000212001000000000000000000000000100220010000000100000000000001011231212010000000000000000000000121224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQLLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWMVTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVLLSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRISIQ
1	SPARKS	3lhqa	0.127	0.895	1.108	threading_1	ETRQHILDVALRLFSQQGVSATS-----LAEIAN---AAGVTRGAIYWHFKN---KSDLFSEIW--ELSESNIGE--LEIEYQAKFPDDPLSVLREILVHILEATVTEERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLLLTRRAAILMRSFISGLMENWLFAPQSFDLKKE-----ARAYVTILLEMYQLCPTLRA---
2	PROSPECT2	2db0A	0.069	0.927	1.197	threading_2	DIREALALEKILIMAKYDESVLKKLIEL----------LDDDLWTVVK------NAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKMIPVLFANYRIGKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLRKVVIKRTVKEGIRLLLL
3	PPA-I	1t33A	0.098	0.791	1.068	threading_3	------------------------------------MNIPTTTTKGEQAKSQLIAAALAQFGEYGL---------HATTRDIAALGQNLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYT-GCDANDTRMILHTHALLGEVLAFRLGKETILLRTG
4	SPARKS	2uxha	0.107	0.850	1.035	threading_4	ETRAQIIEAAERAFYKR----------------------GVAADIAELAGVT---RGAIYWHFNNKAELVQALLDSLHARASESEDEVDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLLDAERAAVAMFAYVDGLIRRWLLLPDSVDLLGD-----VEKWVDTGLDMLRLSPALRK---
5	PROSPECT2	1ejlI	0.132	1.000	1.178	threading_5	ESQLQATQAARKLLSREKQPPIDNIIQFESAWALTNIASGTSEQTKAVVDGGAIAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLDSCWAISYLTDGPNERIEMVVLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVQVILDAISNIFQ
6	SPARKS	2gena	0.124	0.805	1.007	threading_6	-------RKDEILQA-----ALACFSEH-----------GVDIEIRDRSGAS---IGSLYHHFGNKERIHGELYLA-GIGQYAAL---LEAGFAEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFEPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVAWDSVR------AA-------
7	PROSPECT2	1w63A1	0.116	0.982	1.171	threading_7	MEMIQKECAAIRSSFREEDNTYRCRNVAKLLYMH---MLGYPAHFGQLECLKLIIGYLGAMLLLDERQDVHLLMTN-CIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRLYETVLTIMDIK
8	PROSPECT2	3b2aA	0.118	0.964	1.163	threading_8	ISKTEL--RELVLSWQILDAVSLALEDKRALFLILELAGEDDETTRLRA------FVALGEILKRADSDLRMMVLERHLDVFLVKDVPMGSKTFLKAAKTLVSLMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLELALDVLEKALSFPLLENVKIELLKISRIVDGLVYRKVSDLIDSVIS
9	PROSPECT2	1oyzA	0.055	0.995	1.160	threading_9	YGLYNQCKDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFN-ILNNALNDKSACVRATAIESTAQRCKKNPIYSKIVEQSQITAFDKSTNVRRATAFAISVIATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVIEAIIGLSYRKDKRVLSVLCDELDIIEAAGELGDKTLLPVLDT
10	MUSTER	1pw4A2	0.133	0.855	0.850	threading_10	IFMQYVLPKLLWYIA-----IANVFVYLLRYGILDPTYLHFALDKSSWAY-FLYEYAGIPGTLLCSDKVF-----RGN---------------------RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGFMVMIGGSILAVILLIVVMIGEKRRHELQ

Predicted Tertiary Structure


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TM-score=0.901 to 1pw4A SCOP code=f.38.1.1	TM-score=0.765 to 1vi0A SCOP code=a.4.1.9	TM-score=0.595 to 1b3uA SCOP code=a.118.1.2	TM-score=0.757 to 1t33A SCOP code=a.4.1.9	TM-score=0.660 to 1rktA SCOP code=a.4.1.9