Template-based Modeling Results for APPC_ECOLI

Submitted Primary Sequence

>Length 514
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCEEEECCCCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEECCCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHCCCCCCEECCCCCCCHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG
5312100000100000000000000000000000000000012222102100200010000000000000000101111100100300010000000010000000100000000000320120000000000000000000000001011200100100132110100000200111101010000000000000000000000100323233101200000000000000000010110121012212220010100022332201000000023433210010201100000011112120210330223122302302101101121232332230021021011011101101310232231112102211321223001000000000000000000000000111223133231001000000000100100010012112110002110001001121220200000000000000000010100020032012213233223345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFDIDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALRSFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPEQDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQGNREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRIMVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQPWAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQPTQQQG
1	PROSPECT2	1qsaa	0.075	0.955	2.027	threading_1	DSLDEQRSRYAQIKQAWYRQITDDLMPPARTLQSRFVNELARRED--WRGLLAFSAQCNYYYAKWNAWQGAKELWLTGKSQPNACDKLFSVWRAPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFT-------------RQMAAVAFDAENARLMIPSLAQAQEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAILIERRVRMALGTGDRRGLNTWLAREKDEWRYWQADLLLERGR--------EAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKTEQAQLARYAFNNQWWDLSVQATIAGEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQEHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEWGRRY
2	PPA-I	3dh4A	0.099	0.866	1.214	threading_2	AEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLILGLALFALVYSIVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFE-------------MILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAA----------KSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQ-LMASLGDIAATNLPSAAN--------------------ADKAYPWLTQFLPVGVKGVIVSSLASMLNSTATIFTMDIYKEYISPDSGKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWTTSKGAIIGVVASIPFALFLK-FMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK------------------------
3	PROSPECT2	1jdha	0.095	0.885	2.013	threading_3	AVVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLREGLLAIFKSGGIPALVKMGSPVDSVLFYAITTLHNLLLHEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQAYGNQESKLIILASGGPQA-----------------LVNIMRTYTYEKLLWTTSRVLKVNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDQEGMEGLLGTLVQLLGSDDINVVTC----------AAGILSNLTCNNYKNKMMVCQVGGIEALV-------------RTVLRAGDREDITEPAICALRHLTSRHQEAE--MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC----PANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILAVHNRIVIRGLN-------TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIPLTELLHSRNEGVA------TYS
4	PROSPECT2	1qgra	0.088	0.992	1.965	threading_4	MIDANARREVQCVAGIACAEIPVNKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAAALQNLVKIMMGPALFAITIEAMKSDIDEVALQGIFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTDDWNPCKAAGVCLMLLATCCYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLITAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNAADVADDQEEPATYCLSSSFELITTDRPDGHQNNLRSVKNSAKDCYPAVQKTTLVIMERHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFSGQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLYAEYQVCLAAVGLVIIPFCDEVMQLLLENLGNENVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEA----YTGIVQGLKGDQENVHGDEDHTNQA
5	PROSPECT2	1b3ua	0.107	0.926	1.962	threading_5	DDSLYPIAVLQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVTVVRDKAVESLRAIS--HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCSAVKAELRQYFRNLCSDDT------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAVADKFTELQKAVGPEITKTDLVPAFQN--------------LMKDCEAEVRA--------AASHKVKE--------FCENLSADCRENVIMSQILPCIKELVSDANVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTLQKIGPILDNSTQDQDVVLSLA
6	PROSPECT2	1w63A	0.119	0.901	1.953	threading_6	MPAPIRLRRCRNVAKLLYHFGQLECLFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLVQGLALCTLGCMEVEKLLKTSNSYLRKKAALCAVHVIRKPELMEMFLPALHTSVVLL-TEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDSSEAMNDILAQVAVGNAILYETVLTIMDIKSESGLRVLAINILGRFLVALTSLLKTVQTDHNAVQRHRSTIVDCLK--------------------DLDVSIKRRAMEL--SFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLEDEVLDILESVLISNMSTSVTRGYALTAIMKLS----------------------------TRFTCTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSAERMPVMEK
7	MUSTER	3dh4A	0.122	0.893	0.889	threading_7	LIQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIY----IPEFVEKRF--NKKLKTILAVF--WIS---LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFAL-SIVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDG-AGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQR-KSVSEAQKGIVFAAFLKLIVPFLVVLP-GIAAYVITSDPQLMASLGDIAATNLPSAANADKA-YPWLTQF-------LPGVKGVVFAALAAAIVSSLASMLNS-----TATIFTMDIYKEYISPDSGDHKLVNVGRTAA-LIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWTTSKGAIIGVVASIPFALFLK--MPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK------------------------
8	SPARKS	3ibva	0.111	0.856	0.727	threading_8	WNNESNLLELQMIRDSVWSYIKAYISNAVQHLLTLLLQLYPSNWNDFFASLQGVIAASEFSNFYLKVLLSIGDEISLVLKTDVQIQKDNLVKDAIRAMSDIVSFVYEMMLAYSN-------AKNYGTVGLCLQVYAQWVS--WI---------NINLIVN--------EPCMNLLYSFLAACETMTEIVNEKLN---LLNILNLNLFFSKTDPNFDEHVAKLINAQGVELVAIKSDPSSPELKENCSFQLYNLFPY--------------LIRYLSDDYDETSTAV-FPFLSDLLVS---------LRKESSSKELSASLKEFLKSLLEAIIKKDPDSEEEAEFQEMRKKLKIFQDTINSIDSFSSYMYSAITSSLSTAATLSPEN--SWQLIEFALYETYIVLSQILALVTTSQVCRHP---HPLVQLLYMEILVRYASFFDYESAAIP-ALIEYFVGPRGIHNTNER---------------VRPRAWYLFYRFVKSIKKQVVNYGDLLNIS
9	PROSPECT2	3a6pA1	0.107	0.804	1.921	threading_9	AMDNALCEQLVKAVTVMCVPCGLRLAFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIAIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLR--LAEDVVTFQTLPPQRRTLTQNMERIFSFLLNTLQENVNKYQQVKTDT-------------------SQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLL-----------------------LNEQELQLGAAE---------------------------------CLLIAVSRKGK-------LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQL-------CALLGADSDVETPSNFGKYLESFLAFTSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGVMRLACRLDPKTSFQMAGEWLKY----------QLSTF
10	PPA-I	1is2A2	0.098	0.735	0.934	threading_10	------------------------------------------------------------------MNPDLRKERASATFNPELITHILDPENTRRRREIENLILNDPDFQKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIK-------QSEPEPQILDFQTQQY--KLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMAYSHSSGIPNIYVTFTPACTFEGENTVMML-----------------QTARFLMKIYDQVRSGKLVGGMVSYLND--------------LPSVDINSLEGLTEAYKLRAARLVEIA---------AKNLQTHVSHRKSKEVAWNLTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKQAVLRNLCLLYSLYGISQKGGDFLE---------GSII---------TGAQLSQVNARILELLTLIRPNAVALVDAF---DFKDMTLGSVLGRYD

Predicted Tertiary Structure


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TM-score=0.521 to 2q6hA SCOP code=f.54.1.1	TM-score=0.748 to 1slyA SCOP code=a.118.5.1	TM-score=0.522 to 2q6hA SCOP code=f.54.1.1	TM-score=0.938 to 2ooeA SCOP code=a.118.8.7	TM-score=0.677 to 1wa5B SCOP code=a.118.1.1