Template-based Modeling Results for ALKB_ECOLI

Submitted Primary Sequence

>Length 216
MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE
CCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEECCCCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE
552112323313320021000022001310220031012002302222111321120000110013000001220011222223233111200300220022002112223130100000001221311111233222131100000011201010113444331120103200000000201001200232322222222311000100212667
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE
1	MUSTER	2fdjA	1.000	0.944	3.734	threading_1	------------EPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE
2	SPARKS	2fd8a	1.000	0.921	5.547	threading_2	--------------LAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAG---
3	PROSPECT2	2fd8A	0.985	0.921	3.770	threading_3	--------------LAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFR---QAG
4	PPA-I	2fdjA	1.000	0.944	5.252	threading_4	------------EPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE
5	HHPRED-l	3i3q_A	1.000	0.940	7.507	threading_5	------------EPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKK-
6	HHPRED-g	3i3q_A	1.000	0.940	8.296	threading_6	------------EPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKK-
7	SP3	2fd8a	1.000	0.921	5.697	threading_7	--------------LAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAG---
8	SAM-T99	2fdjA	1.000	0.921	6.699	threading_8	------------EPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQ-----
9	MUSTER	2iuwA	0.201	0.898	2.488	threading_9	HMRVIDREGVYEISLSPRVCLYPGFVDKEADWILEQLCQDV---PWKQTGIREDITYQQPRLTA----WYGE-LPYTYSRITME---PNPHWHPVLRTLKNRIEENTGHT---FN-SLCNLYRNEKDSVDWHSDDEPSLGPIIASLSFGATRTFEMRKKPPYVERVKIPLDHGTLLIMEGATQADWHRVPKEYHSR-----EPRVNLTFRTVYP--
10	SPARKS	3h8oa	0.223	0.894	3.407	threading_10	------GSHSWRHIRAEGLSSYTVLFGAEADEIFQELEKEVEYFTGLARVQVFGKWHSVPRKQA----TYGDGLTYTFSGLTL-SPKPWI---PVLERIRDHVSGVTG---QTFNFVLINRYKDGSDHIGEHRDDCRELGSPIASVSFGASRDFVFRHKSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVL----APRVNLTFRKILL--

Predicted Tertiary Structure


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TM-score=0.964 to 2fdjA TM-score=0.949 to native SCOP code=b.82.2.10	TM-score=0.964 to 2fdjA TM-score=0.949 to native SCOP code=b.82.2.10	TM-score=0.942 to 2fdjA TM-score=0.951 to native SCOP code=b.82.2.10	TM-score=0.933 to 2fdjA TM-score=0.947 to native SCOP code=b.82.2.10	TM-score=0.964 to 2fdjA TM-score=0.949 to native SCOP code=b.82.2.10

Experimental Structure

Download 3khbB

SCOP code=b.82.2.10