Template-based Modeling Results for YMDA_ECOLI

Submitted Primary Sequence

>Length 103
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCEEEEEECCCCEEEEEEEEHHHHCHHHCCCCCEEEEEEEEECHHHCEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
4321100011000000001111222232010001000021101021232201020243111102100031112131322110102010015333100010214
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDVSTQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEYN
1	SPARKS	1cvra1	0.186	0.680	1.103	threading_1	----------------------PTEMQ----------VTAPANISASAQTFEVACDYNGAIATLSDDGD-MVGTAIVKDGKAIIKLNEIADETNLTLTVVGYN
2	HHPRED-l	2uy6_B	0.111	0.699	1.423	threading_2	-----------------------------KVTFNNTVVDAPCSISQKDQSIDFGQLSGGVSMDLDIELVNCDITAFKGG-KGTVKLAFTGPIVNSDELDTQG-
3	HHPRED-g	2uy6_B	0.127	0.689	1.447	threading_3	-----------------------------KVTFNNTVVDAPCSISQKDQSIDFGQLSGGVSMDLDIELVNCDITAFKGG-KGTVKLAFTGPTGL-AIVV-QGA
4	SAM-T99	2jtyA	0.281	0.621	3.247	threading_4	---------------------AATTVNGGTVHFKGEVVNAACAVDAGDQTVQLGQVRTASLAQEGATSSAVGFNIQLNDCDTNVA------------------
5	HHPRED-l	2jty_A	0.295	0.757	1.422	threading_5	---------------------AATTVNGGTVHFKGEVVNAACAVDAGDQTVQLGQVRQGATVGFNIQLNDCDTNV---ASKAAVGVQILDRTGAALTFKVQY-
6	HHPRED-g	2jty_A	0.303	0.738	1.374	threading_6	---------------------AATTVNGGTVHFKGEVVNAACAVDAGSVTVQLGCDTNASKAAVAFLGTAIDAGTVLALQSAA------GSATNVGVQILDRT
7	SAM-T99	2uy7B	0.154	0.505	1.184	threading_7	---------------------------QGKVTFNNTVVDAPCSISQKDQSIDFGQL-SKSFLEAGGVSKPMDLDIELVNC-----------------------
8	HHPRED-l	2xg5_B	0.169	0.689	1.321	threading_8	------------------------------AAFHGEVVRPACTLAMEWQIIDMGETPNGPERKFSLRLRNCEFN-SQGGSDSRIRVTFDGVAKGINLQIADY-
9	HHPRED-g	2w07_B	0.088	0.553	1.202	threading_9	-----------------------------------NVYIPPCTINNGNITISISCPY--GSL--WIKVTGNTM--GGG-QNNVL----ATNITHFGIALYQGK
10	HHPRED-l	2w07_B	0.127	0.534	1.252	threading_10	-----------------------------------NVYIPPCTINNGNIVVDISCPY--GSLWIKVTGNTMGGQNNV---L-------ATNITHFGIALYQY-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.332 to 1amuA SCOP code=e.23.1.1	TM-score=0.712 to 1cvrA SCOP code=b.1.18.12	TM-score=0.362 to 2uy7B SCOP code=b.2.3.2	TM-score=0.361 to 1tigA SCOP code=d.68.1.1	TM-score=0.314 to 1or4A SCOP code=a.1.1.2