Template-based Modeling Results for YHDU_ECOLI

Submitted Primary Sequence

>Length 59
MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM
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--------10--------20--------30--------40--------50

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCEEECCCCCCCCCCC
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--------10--------20--------30--------40--------50

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM
52431121110000011011001200210222223023232111010010322323444
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--------10--------20--------30--------40--------50

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNPLKLVNCDELNFQDRM
1	PPA-I	1s5li	0.132	0.644	1.190	threading_1	-------METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE--------------
2	PPA-I	2kv5A	0.212	0.559	1.008	threading_2	-----MKDLMSLVIAPIFVGLVLEMISRVLDEEDDSRK---------------------
3	MUSTER	1qrjB	0.222	0.915	0.910	threading_3	PTAKDLQDLLQYLCSSLVASLHHQQLDSLISEAET-RGITGYNPL----AGPLRVQANN
4	SPARKS	1xrda	0.250	0.814	0.953	threading_4	MWRIWPRQALVGLATFLFVLALLIHFILLSTERFNWLEGASTKPVQTS-----------
5	PROSPECT2	2x43S	0.096	0.881	0.493	threading_5	MTRDQMKNAAAEAKDNVHDAAEVRDAVSSTVESIKDKLSGGSSS-------RASSYTLE
6	PPA-I	2wqgA	0.200	0.763	0.997	threading_6	GSADYSSLTVVQLKDLLTKRLKNEWVQRLIKDDEESKGESEVSPQ--------------
7	HHPRED-l	1yew_C	0.222	0.915	0.567	threading_7	EFETYWMNFLYTEIVLEIVTASILWGYLWKTR---DRNLAALTPREELRRNF-THQDG-
8	HHPRED-g	2kog_A	0.321	0.475	0.721	threading_8	LKRKYWWKIILGVICAII---LIIIIVYFST----------------------------
9	SP3	1nkd_	0.218	0.932	0.636	threading_9	MTKQEKTALNMARFIRSQTLTLLEKLNELADAADEQADIESLHDH----ADELSCLARF
10	SAM-T99	2ji2A2	0.340	0.898	0.735	threading_10	KIDGGYKVKVGAVAHPMEEKHYIQWIELLA--DDKCYT----QFLKPGQAPEAVFLIEA

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.363 to 1ppjI SCOP code=d.184.1.3	TM-score=0.468 to 1r7gA SCOP code=j.35.1.1	TM-score=0.603 to 1rsoA SCOP code=a.194.1.1	TM-score=0.540 to 2jr8A SCOP code=j.4.1.3	TM-score=0.289 to 1mi7R SCOP code=a.4.12.1