Template-based Modeling Results for YGJH_ECOLI

Submitted Primary Sequence

>Length 110
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
CCCCCHHHHHEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEHHHCCCCHHHHCCCEEEEEEECCCCEECCEECCEEEEEEECCCCCEEEEECCCCCCCCCCEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
55312122111010100100202314513200001001144222000101311222212111000001033120111203000000313432200001134313322212
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
1	MUSTER	3ersX	1.000	1.000	4.513	threading_1	METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
2	SPARKS	2cwpa	0.321	0.991	4.704	threading_2	MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
3	PROSPECT2	2cwpA	0.321	0.991	2.133	threading_3	MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
4	PPA-I	3ersX	1.000	1.000	7.373	threading_4	METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
5	HHPRED-l	2cwp_A	0.324	0.982	3.907	threading_5	MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDG-KVYLIPVPEEVPVGARV-
6	HHPRED-g	2cwp_A	0.321	0.991	3.216	threading_6	MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
7	SP3	2cwpa	0.321	0.991	4.539	threading_7	MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
8	SAM-T99	1pybA	0.280	0.973	4.118	threading_8	-ALIGIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAASDGE--NLSVIVPDRDVKEGAKLS
9	MUSTER	2cwpA	0.321	0.991	4.434	threading_9	MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
10	SPARKS	2q2ha	0.284	0.991	4.538	threading_10	SGEISYADFEKVDIRVGTIVEAVPFPEARKAIKVKIDFGPEIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADANGD-IVLAAVERPVPNGEKMC

Predicted Tertiary Structure


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TM-score=0.891 to 1mkhA TM-score=0.985 to native SCOP code=b.40.4.4	TM-score=0.427 to 1nzyB TM-score=0.206 to native SCOP code=c.14.1.3	TM-score=0.857 to 1mkhA TM-score=0.847 to native SCOP code=b.40.4.4	TM-score=0.857 to 1mkhA TM-score=0.847 to native SCOP code=b.40.4.4	TM-score=0.891 to 1mkhA TM-score=0.985 to native SCOP code=b.40.4.4

Experimental Structure

Download 3ersX

SCOP code=b.40.4.4