Template-based Modeling Results for YGGL_ECOLI

Submitted Primary Sequence

>Length 108
MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSELFDVWWD
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSELFDVWWD
CCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEECC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSELFDVWWD
553332331322100310130001000202321233102200120021012012000111121112000002321402331110023003525122020030000116
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSELFDVWWD
1	PPA-I	1th5A	0.149	0.620	1.135	threading_1	-----------------------------MLELNEENVEKVLNEIRPYLAGTGGLMIKGP-----IVKVRLTGPAAVVRTVRIAVSKKLREKSIQIVQLLS-------
2	PPA-I	2c1gA3	0.108	0.602	1.083	threading_2	-----------------------------TLDQLFSDASKAKEQLIKELTSFWNFDYKDSQIILYEIALPVSQSSYLLEKDAALYQSYFDKKHQ--------------
3	PPA-I	3canA2	0.130	0.639	1.060	threading_3	----------------------YYIRIPLIEGVNAD--EKNIKLSAEFLASLPRH-------PEIINLLPYHDKQTPSEEVQQQCIQILTDYGLKATIGG--------
4	PPA-I	1j27A	0.101	0.824	1.046	threading_4	-------------------MKAYLGLYTARPARSLKEKRALIKPALERLKARFPVSAARLYGLDAWGFTLLGNDPAWVEETMRAAARFLAEAGGFQVALEEFRLEAFE
5	MUSTER	1dnpA1	0.121	0.843	0.681	threading_5	MSPRQAELINAQLNQIALAEKG--IPLLFREVDDFVASVEIVKQVCAEN---------------VTHLFYNYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAV
6	SPARKS	3ai7a	0.194	0.907	0.741	threading_6	LSRISDEELHEFFHG-----MGYEPYEFVFDDEDHMSIHRRFAELWETIWDEATAQTDNVHRPFYPMLIFRTPKGWTTEAHFEVLKNWLESYKPE-----ELFDANGA
7	PROSPECT2	1ykgA	0.108	0.944	0.603	threading_7	IQTGNARRVAEALR-DDLLAAKLNVKLVNAGDYKFKQIASEAVALHKFLFSKKAP---KLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGE--RLLDRVDADVE
8	PPA-I	1u02A1	0.086	0.648	0.989	threading_8	---------------------------------FLGVFDRIYEDTRSWVSDFPGLRIYRKNL----AVLYHLGLGADKPKLRSRIEEIARIFGV-ETYYGKIIELRVP
9	HHPRED-l	2qvt_A	0.286	0.194	0.728	threading_9	--------------------------------------------------------------------------------------GYTRFRPTASVTLSGLVNVKW-
10	HHPRED-g	3qd7_X	0.152	0.852	0.627	threading_10	RREGLQHGVLDKLRSGKY---PQQASLNLLR-QPVEECRKMVFSFIQQALADGLLIIHGKGRD------------DKSNIVRSYVARWLTEFDVQAYCTALPHHGGSG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.700 to 1hzdA SCOP code=c.14.1.3	TM-score=0.629 to 1th5A SCOP code=d.52.8.1	TM-score=0.586 to 2c1gA SCOP code=c.6.2.3	TM-score=0.502 to 1je3A SCOP code=d.68.3.3	TM-score=0.756 to 1j27A SCOP code=d.58.50.1