Template-based Modeling Results for YGDI_ECOLI

Submitted Primary Sequence

>Length 75
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ
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--------10--------20--------30--------40--------50--------60--------70

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ
CCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEECCCCCEEEECHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ
443000100000000001201122100102212100122313224311001021341222102421032123234
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ
1	MUSTER	2rd1B	0.423	0.693	2.417	threading_1	----------------------TTNYVTTKNGQTIVTQGKPQLDKETGT-SYTDQEGNQREINSNDVAQLIKADL
2	SPARKS	2jn0a	0.560	0.667	2.494	threading_2	-----------------------DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER--
3	PROSPECT2	2k57A	0.309	0.733	1.143	threading_3	M--------------------ASPTVITLNDGREIQAVDTPKYDEESGFYEFKQLDGKQTRINKDQVRTVKDLLE
4	PPA-I	2rd1B	0.423	0.693	3.315	threading_4	----------------------TTNYVTTKNGQTIVTQGKPQLDKETGT-SYTDQEGNQREINSNDVAQLIKADL
5	HHPRED-l	2rd1_A	0.500	0.667	4.677	threading_5	----------------------TNYV-TTKNGQTIVTQGKPQLDKETG-TSYTDQEGNQREINSNDVAQLIKAD-
6	HHPRED-g	2rd1_A	0.490	0.680	3.729	threading_6	----------------------TNYV-TTKNGQTIVTQGKPQLDKETG-TSYTDQEGNQREINSNDVAQLIKADL
7	SP3	2jn0a	0.560	0.667	2.411	threading_7	-----------------------DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER--
8	SAM-T99	3bduA	0.647	0.680	2.882	threading_8	--------------------SS-NYVLHTNDGRTIVAEGKPKVDDETG-ISYTDAYGQQQQINRDNVKEAKGK--
9	MUSTER	2ra2B	0.755	0.707	2.393	threading_9	---------------------SGPNYVHTNDGRSIVTDGKPQTDNDTG-ISYKDANGNKQQINRTDVKEVALLEH
10	SPARKS	3bdua	0.647	0.680	2.278	threading_10	---------------------SSNYVLHTNDGRTIVAEGKPKVDDETG-ISYTDAYGQQQQINRDNVKEAKGK--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.756 to 2rd1B SCOP code=b.38.1.6	TM-score=0.750 to 2ra2B SCOP code=b.38.1.6	TM-score=0.625 to 2k57A SCOP code=b.38.1.6	TM-score=0.845 to 2k57A SCOP code=b.38.1.6	TM-score=0.756 to 2rd1B SCOP code=b.38.1.6