Template-based Modeling Results for YGBA_ECOLI

Submitted Primary Sequence

>Length 117
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
552332231120022000000242342322031021002101210240222333110330212011221231022003100110001000100100023323233123333334344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE
1	PPA-I	1ltqA1	0.094	1.000	1.021	threading_1	AREFIAKNPGFYNINRDDYRQSIAHEERDYTKKKEGIVTGQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVPWTELVKRNSKRGTKAVPIDVLRSYKSRE
2	PPA-I	3l0iC2	0.103	1.000	1.016	threading_2	TISPKGYAILQSLWGAASDYSRAAATLTESTVEPGLVSAVNKSAFFDCKLSPNERATPDPDFKVGKSKILVGIQFIKDVADPTSALNHKIAAIQKLERSNNVNDETLESVLSSKGEN
3	MUSTER	3saeA3	0.167	0.923	0.768	threading_3	AFICSTGQFNKDVASMLNLYRASQLAFPGE-NILDEAKSFATKYLREA---LEKSETSSAWNN--KQNLSQEIKYALKTSWHASV---PRVEAKRYCQVYRPDYARIAKCVYKLPYV
4	SPARKS	2hz8a	0.131	0.915	0.729	threading_4	ELRELLKAEQQAIKIYKEVLKKAKEGDEQLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVKI----LEDEEKHIEWLKAASKQGNAEQFASLVQQILQDEQRHVEEIEKKN------
5	PROSPECT2	3dt5A	0.126	0.949	0.772	threading_5	RLKAIEDRLEKFYIPLIKAF-SSYVYTAQTEDEIETIITAGNNLLRVLPHFKFKKIAGSANWTFYAKEDFEQWKEALD-----VLWEEFLEVLKEYYTLSGTEISLPEKPDWLIGYK
6	PPA-I	2kkpA	0.101	0.846	0.999	threading_6	IT------VEQWLNRWLTDYAKPHLRQSTWESYETVLRLHVIPTLGSIPLKK------------LQPADIQRLYASKLESGLVRYIHVVLHEAMSQARESGLLLQNPTEAAKPPRHP
7	HHPRED-l	1k19_A	0.121	0.778	0.585	threading_7	INLDEILANKRLLVAYVNCVM-----ERGKCSEGKELKEHLQD--------AIENGCKKCT-----ENQEKGAYRVIEHL----IKNEIEIELTAKYDPTG---NWRKKYEDVIPE-
8	HHPRED-g	2oss_A	0.131	0.846	0.537	threading_8	TSNKRQTNQLQYLRVVLKTLWKHQFAVKLNLPDYYKIMGTIKKRLENNYYWNA---------QECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN--ELPTEE-------
9	SP3	1h75a	0.231	0.556	0.657	threading_9	---------------MITIY------TRNDCVQCHATKRAMENR--GFDFEM---------INVDRPEAAEALRAQ----GFRQL---PVVIAPDMINRLHPAP-------------
10	SAM-T99	3iamC	0.208	0.410	0.843	threading_10	----------------VPLFCSEKHLSPDICPVGALLDLTARFRARNWEMEETPTTCALCPVGC-----------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.419 to 1hzdA SCOP code=c.14.1.3	TM-score=0.796 to 1ltqA SCOP code=c.108.1.9	TM-score=0.503 to 1z0jB SCOP code=a.2.19.1	TM-score=0.525 to 1yd8G SCOP code=a.7.8.1	TM-score=0.624 to 1x8yA SCOP code=h.1.20.1