Template-based Modeling Results for YFED_ECOLI

Submitted Primary Sequence

>Length 130
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA
CCHHHHHCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCHHHCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA
4431222111310140110032101210433213224232231120100102230020022022222220112133321312222412001100200221232103300210022002200230223434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVAQFLSREGIRNFLARLDIDESA
1	MUSTER	1tntA	0.257	0.569	1.160	threading_1	M---ELWVSPKELANLPGLTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNAN--------SLPVEAKAALLLRQGE--IETSLGYFE-------------------------------------------
2	SPARKS	1tns_	0.216	0.569	1.618	threading_2	---MELWVSPKELANLPGLTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNAN--------SLPVEAKAALLLRQGEIETSLGYFE---------------------------------------------
3	PROSPECT2	1g4da	0.269	0.515	0.838	threading_3	KS---IWCSPQEIMAADGMSVAGVHYRANVQGWTKRKKEGVKGGKAVEYD----------------------------------------------VMSMPTKEREQV---IAHLG-----------LST
4	PPA-I	1tntA	0.216	0.569	1.938	threading_4	---MELWVSPKELANLPGLTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNAN--------SLPVEAKAALLLRQGEIETSLGYFE---------------------------------------------
5	HHPRED-l	1tns_A	0.216	0.569	4.372	threading_5	---MELWVSPKELANLPGLPSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAALLL----------RQGEIETSLGYFE-------------------------------------------
6	HHPRED-g	1tns_A	0.216	0.569	3.826	threading_6	---MELWVSPKELANLPGLPSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNANSLPVEAKAALLLRQG------EIETSLGYFE-----------------------------------------------
7	SP3	1tns_	0.230	0.569	1.563	threading_7	M---ELWVSPKELANLPGLTSAGVIYVAKKQGWQNRTRAGVKGGKAIEYNAN--------SLPVEAKAALLLRQGEIETSLGYFE---------------------------------------------
8	SAM-T99	1tntA	0.230	0.569	2.371	threading_8	---MELWVSPKELANLPGLTSAGVIYVAKKQGWQNRTRAGVKGG--------KAIEYNANSLPVEAKAALLLR-----------------QGEIE--------------------------TSLGYFE--
9	MUSTER	1g4dA	0.209	0.515	1.044	threading_9	---KSIWCSPQEIMAADGMSVAGVHYRANVQGWTKRKKEGVKGGKAVEYDVM--------SMPTKEREQVIAHLGLST----------------------------------------------------
10	SPARKS	1g4da	0.194	0.515	1.422	threading_10	---KSIWCSPQEIMAADGMSVAGVHYRANVQGWTKRKKEGVKGGKAVEYD--------VMSMPTKEREQVIAHLGLST----------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.665 to 1tntA SCOP code=a.6.1.7	TM-score=0.688 to 1tntA SCOP code=a.6.1.7	TM-score=0.618 to 1tntA SCOP code=a.6.1.7	TM-score=0.661 to 1g4dA SCOP code=a.6.1.7	TM-score=0.688 to 1tntA SCOP code=a.6.1.7