Template-based Modeling Results for YDDM_ECOLI

Submitted Primary Sequence

>Length 94
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
5522221200100220033140203200310310220023012132212230001002002011200000120110120233132231232235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ
1	MUSTER	3cecA	0.261	0.936	3.090	threading_1	VR---PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSHEYEQVTLV---
2	SPARKS	3ceca	0.261	0.936	3.340	threading_2	---VRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSHEYEQVTLV---
3	PROSPECT2	3cecA	0.256	0.957	1.614	threading_3	VR---PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQS-HKEEYEQVTLV
4	PPA-I	3cecA	0.256	0.957	4.088	threading_4	---VRPIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSH-KEEYEQVTLV
5	HHPRED-l	2ict_A	1.000	0.926	3.179	threading_5	---ANHPRPGDIIQESLDELNVSLREFARA-EIAPSTASRLLTGKAALTPE-AIKLSVVIGSSPQ-WLNLQNAWSLAEAEKTVDVSRLRRLVT-
6	HHPRED-g	2eby_A	0.311	0.957	3.379	threading_6	----KPTTPGDILYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMELGRIETVAEY
7	SP3	3ceca	0.261	0.936	3.645	threading_7	VR---PIHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSHKYEQVTLV---
8	SAM-T99	3trbA	0.261	0.936	3.625	threading_8	-----PIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLNLQDAYDIKALKKS-GKKIEKEVTPY
9	MUSTER	3trbA	0.264	0.926	2.979	threading_9	----RPIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLNLQDAYDIKALKKSGKEKEVTPY---
10	SPARKS	3trba	0.264	0.926	3.164	threading_10	----RPIHPGEILAEELGFLDKSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPEFWLNLQDAYDIKALKKSGKEKEVTPY---

Predicted Tertiary Structure


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TM-score=0.778 to 2ictA SCOP code=a.35.1.3	TM-score=0.757 to 2ictA SCOP code=a.35.1.3	TM-score=0.786 to 2ictA SCOP code=a.35.1.3	TM-score=0.774 to 2ictA SCOP code=a.35.1.3	TM-score=0.758 to 2ictA SCOP code=a.35.1.3