Template-based Modeling Results for YBDZ_ECOLI

Submitted Primary Sequence

>Length 72
MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQSQASCQQWLEAHWRTLTPTNFTQLQEAQ
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--------10--------20--------30--------40--------50--------60--------70

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQSQASCQQWLEAHWRTLTPTNFTQLQEAQ
CCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQSQASCQQWLEAHWRTLTPTNFTQLQEAQ
542212233330000001023210000122020021022213231120012002201211101301212344
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQSQASCQQWLEAHWRTLTPTNFTQLQEAQ
1	MUSTER	2khrA	0.394	0.986	4.986	threading_1	M-STNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED
2	SPARKS	2gpfa	0.229	0.972	4.083	threading_2	--MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKA
3	PROSPECT2	2khrA	0.375	1.000	1.594	threading_3	GSSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED
4	PPA-I	2khrA	0.375	1.000	9.574	threading_4	HMSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED
5	HHPRED-l	2pst_X	0.230	0.847	7.630	threading_5	---------DDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMD--
6	HHPRED-g	2pst_X	0.230	0.847	6.064	threading_6	---------DDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMD--
7	SP3	2gpfa	0.229	0.972	3.853	threading_7	--MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKA
8	SAM-T99	2khrA	0.375	1.000	5.237	threading_8	HMSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED
9	MUSTER	2gpfA	0.229	0.972	4.968	threading_9	--MTSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCLAYIEEVWTDMRPLSLRQHMDKA
10	SPARKS	2khra	0.394	0.986	3.983	threading_10	M-STNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED

Predicted Tertiary Structure


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TM-score=0.492 to 2gpfA SCOP code=d.100.2.1	TM-score=0.485 to 2gpfA SCOP code=d.100.2.1	TM-score=0.816 to 2gpfA SCOP code=d.100.2.1	TM-score=0.492 to 2gpfA SCOP code=d.100.2.1	TM-score=0.485 to 2gpfA SCOP code=d.100.2.1