Template-based Modeling Results for YBDF_ECOLI

Submitted Primary Sequence

>Length 122
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
CCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCEEEEEEEECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
45232013101300251330211122132000010000000000124222000020123102200321221210210123100000013312321022001200200042013311431434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSSELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLINDSWNLVVDGLAKRDQKRVRPG
1	MUSTER	2fkiA	0.212	0.967	3.891	threading_1	MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
2	SPARKS	2fkia	0.212	0.967	4.167	threading_2	MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
3	PROSPECT2	2fkiA	0.212	0.967	2.270	threading_3	MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
4	PPA-I	2fkiA	0.212	0.967	6.773	threading_4	MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
5	HHPRED-l	2fki_A	0.214	0.959	7.055	threading_5	MTISE----LLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQ-
6	HHPRED-g	2fki_A	0.203	0.967	5.910	threading_6	----MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
7	SP3	2fkia	0.212	0.967	4.434	threading_7	MT----ISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVENRPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNLLPEEKRKLLVQL
8	SAM-T99	2kfpA	0.282	0.844	4.920	threading_8	----MNRQQFIDYAQKKYDTKPDHPWFPDYAVFRHNDKWYALLMDIPAVDVIDLKVQPELVGSLRKK-PGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTR--------------
9	MUSTER	2kfpA	0.273	0.902	2.520	threading_9	MN----RQQFIDYAQKKYDTKPDHPWFPDYAVFRHNDKWYALLMDIKRVDVIDLKVQPELVGSLRKK-PGIYPAYHMNKEHWITVLLNGPLGAKEIHSLIEDSFQLTRLE-------HHHHH
10	SPARKS	2a1va	0.322	0.967	4.005	threading_10	QT----VDDLRSVCDELPHSLETFPFDDETLVFKVGYRMYALTDITQDPLRLSLKVDPERGEELRQAHPSIAPGYHLNKKHWVTVTLDGTVPAELLGELLRGSYLLVTKKFTKAERKELGPD

Predicted Tertiary Structure


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TM-score=0.973 to 2fkiA SCOP code=d.198.3.1	TM-score=0.413 to 1nzyB SCOP code=c.14.1.3	TM-score=0.974 to 2fkiA SCOP code=d.198.3.1	TM-score=0.973 to 2fkiA SCOP code=d.198.3.1	TM-score=0.973 to 2fkiA SCOP code=d.198.3.1