Template-based Modeling Results for YAJD_ECOLI

Submitted Primary Sequence

>Length 115
MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK
CCCCCHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK
5521133223222111310041112000301221013003200011112311111410110000001003231131010121122222233234322303101002033223444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTVHHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYNPFADLKAMMNKKK
1	HHPRED-l	1e7l_A	0.237	0.843	1.022	threading_1	MLLTGKLY----KEEKQKFYDAQNGKCLICQRELNPDVQ----ANHLDHDHELNGPAGKVRGLLCNLCDAAEGQMKHKFNRSGLK---GQGVD------YLEWLENLLTYLKSD-
2	HHPRED-l	2qgp_A	0.162	0.643	1.007	threading_2	--------VKREKESQWWKNRIARGICHYCGEIFPPEE---LT-DHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPVWEEYLDSL-----------------------------
3	MUSTER	2qgpB	0.155	0.730	0.974	threading_3	IVEVSEQEVKREK-EKARELRRSQWICHYCGEIFPPEEL----TDHLVPVVRGGKSTRGNVVPACKECNNRKKYLPVEWEEYLDSL------ESE--------------------
4	SPARKS	1e7la2	0.214	0.852	0.871	threading_4	--MLLTGKLYKE--EKQKFYDAQNGKCLICQRE-LNPDVQAN---HLDHDHENGPKAGKVRGLLCNLCDAAEGQMKHKFNRSGLKGQGVDYLE---------WLENLLTYLKSDY
5	PROSPECT2	1e7la2	0.221	0.826	0.707	threading_5	MLLTGKLYKE----EKQKFYDAQNGKCLICQRELNPDVQAN----HLDHDHELNGPKAGKVRLLCNLCDAAEGQMKHKFNRSGLKGQGVDY------------LEWLENLLTQNN
6	PPA-I	1gh6A	0.124	0.843	0.880	threading_6	ERSAWGNIPLMRKAYLKKCKEFHP---DKGGDEEKMKKMNTLYKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSDDEAT---------------
7	HHPRED-l	2dmd_A	0.245	0.461	0.801	threading_7	YAAADSSSLNKH--LR-IHSDERPFKCQICPYASR--NSSQLTVHLRSHTGDSGPSSG---------------------------------------------------------
8	HHPRED-g	1e7l_A	0.235	0.852	0.999	threading_8	MLLTGKLYKE----EKQKFYDAQNGKCLICQRELNPDVQA----NHLDHDHELNGPAGKVRGLLCNLCDAAEGQMKHKFNRSGLK---GQG------VDYLEWLENLLTYLKSDY
9	SP3	3fw2a	0.140	0.991	0.690	threading_9	YASLPEKITRSSDAFKQKSINFWASWNDSISQKQSNSELREIYKKYKKNKYISLDVDKQQWKDAIKQVCDFGGLNSEVAKQYSIYKIPANSSDGKILAKNLRLKKKIENIVEEA-
10	SAM-T99	2qncA	0.213	0.774	0.952	threading_10	----MLLTGKLYKEEKQKFYDAQNGKCLICQRELNPD----VQANHLDHDHELNGP--K---LLCNLCDAAEGQMKHKFNRSGLKGQGVDYLEWLENLLTYL-------------

Predicted Tertiary Structure


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TM-score=0.437 to 1nzyB SCOP code=c.14.1.3	TM-score=0.651 to 2qncA SCOP code=a.140.4.1	TM-score=0.456 to 1yi2U SCOP code=g.39.1.6	TM-score=0.469 to 1s1iS SCOP code=i.1.1.1	TM-score=0.462 to 1yi2U SCOP code=g.39.1.6