Template-based Modeling Results for YAGB_ECOLI

Submitted Primary Sequence

>Length 116
MNKDSTQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFTGSFSEVQTLQLDEAFPHFVAHLELMLLSCELNPRYAHCVTLYRNGLTGEADTLGSHGYVYIAILNRHGFNRHLRVI
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNKDSTQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFTGSFSEVQTLQLDEAFPHFVAHLELMLLSCELNPRYAHCVTLYRNGLTGEADTLGSHGYVYIAILNRHGFNRHLRVI
CCCCCCHHCCCCCCCCCCCCCEEEECCCEEEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCCCCCEEEEEEECCCCCCCCEECC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNKDSTQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFTGSFSEVQTLQLDEAFPHFVAHLELMLLSCELNPRYAHCVTLYRNGLTGEADTLGSHGYVYIAILNRHGFNRHLRVI
55432232110333111011010022111000001211000201320011013001100110120012231213211000011400001013111100000000233123420223
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNKDSTQTWGLKRDITPCFGARLVQEGHRLHFLADRAGFTGSFSEVQTLQLDEAFPHFVAHLELMLLSCELNPRYAHCVTLYRNGLTGEADTLGSHGYVYIAILNRHGFNRHLRVI
1	MUSTER	2jn7A	0.619	0.905	4.393	threading_1	MSN---TTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYPTQR--------
2	SPARKS	2h28a	0.557	0.914	5.177	threading_2	----DRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFPL-LKQLE-LLTSGELNPRHQHTVTLYAKGLTCKADTLSSCDYVYLAVYPTPEKNLE----
3	PROSPECT2	2jn7A	0.610	0.905	2.086	threading_3	MSNTT---WGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYPTQR--------
4	PPA-I	2jn7A	0.619	0.905	7.863	threading_4	---MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYPTQR--------
5	HHPRED-l	2inw_A	0.579	0.922	8.921	threading_5	DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLL-KQLEL-LTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAA-------
6	HHPRED-g	2inw_A	0.579	0.922	7.529	threading_6	DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLL-KQLEL-LTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAA-------
7	SP3	2h28a	0.557	0.914	2.631	threading_7	----DRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGLFSDADAYHLDQAFP-LLKQLE-LLTSGELNPRHQHTVTLYAKGLTCKADTLSSCDYVYLAVYPTPEKNLE----
8	SAM-T99	2jn7A	0.619	0.905	6.912	threading_8	MSNT---TWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYPTQR--------
9	MUSTER	2inwA	0.570	0.922	4.162	threading_9	DDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDVDAYHLDQAFPLL-KQLE-LLTGGELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAA-------
10	SPARKS	1jnua	0.098	0.793	0.604	threading_10	TDPRLPD--NPIIFASDRF-LELT--E----Y--TREEVLGN-NCRFLQGRGTD-RKAVQLIRDAVKEQR---DVTVQVLNYTK------G--GRAFWNLFHLQVMRDENGDVQYF

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.944 to 2jn7A SCOP code=d.110.8.1	TM-score=0.948 to 2jn7A SCOP code=d.110.8.1	TM-score=0.851 to 2inwA SCOP code=d.110.8.1	TM-score=0.945 to 2jn7A SCOP code=d.110.8.1	TM-score=0.949 to 2jn7A SCOP code=d.110.8.1