Template-based Modeling Results for SMPA_ECOLI

Submitted Primary Sequence

>Length 113
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
44111000000000000000112341113121220110223102302322213100200111212321121000000102324432211000000242110110333322345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
1	MUSTER	2kxxA	0.959	0.858	3.788	threading_1	----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
2	SPARKS	2kxxa	0.959	0.858	3.874	threading_2	----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
3	PROSPECT2	2kxxA	0.959	0.858	1.941	threading_3	G----------------SHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
4	PPA-I	2kxxA	0.959	0.858	5.208	threading_4	----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
5	HHPRED-l	2km7_A	0.989	0.823	5.926	threading_5	-------------------SSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG-
6	HHPRED-g	2pxg_A	0.293	0.814	6.129	threading_6	----------------MAGSGI----IYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLRTEIKNFTVFFENE-QVVRWEGDYFPSQD
7	SP3	2kxxa	0.959	0.858	3.695	threading_7	----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
8	SAM-T99	2kxxA	1.000	0.823	3.963	threading_8	--------------------STLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
9	MUSTER	2pxgA	0.293	0.814	2.366	threading_9	----------------MAGSGI----IYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVRLARTEIKNFTVFFE-NEQVVRWEGDYFPSQD
10	SPARKS	2km7a	0.989	0.832	3.694	threading_10	-------------------SSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN

Predicted Tertiary Structure


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TM-score=0.435 to 1f02I TM-score=0.466 to native SCOP code=b.1.14.1	TM-score=0.435 to 1f02I TM-score=0.466 to native SCOP code=b.1.14.1	TM-score=0.435 to 1f02I TM-score=0.466 to native SCOP code=b.1.14.1	TM-score=0.431 to 1f02I TM-score=0.471 to native SCOP code=b.1.14.1	TM-score=0.435 to 1f02I TM-score=0.466 to native SCOP code=b.1.14.1

Experimental Structure

Download 2yh9B

SCOP code=g.59.1.1