Template-based Modeling Results for RS11_ECOLI

Submitted Primary Sequence

>Length 129
MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
CCCCCCCCCCCCEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
544332424342222132000002012100000001341111000001011121233112100110022002002311021010002111311200020131120200001122301221132344345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
1	MUSTER	1i94K	0.537	0.938	4.360	threading_1	--------KKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
2	SPARKS	1fjgk	0.538	0.907	4.484	threading_2	------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
3	PROSPECT2	3bbnK	0.534	0.915	2.967	threading_3	-----------SARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRRV
4	PPA-I	1i94K	0.537	0.938	4.745	threading_4	--------KKKVKRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
5	HHPRED-l	2vqe_K	0.543	0.899	5.868	threading_5	------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFR-
6	HHPRED-g	2vqe_K	0.538	0.907	4.901	threading_6	------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
7	SP3	1fjgk	0.538	0.907	4.428	threading_7	------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRK
8	SAM-T99	3i1sK	1.000	0.907	6.561	threading_8	------------RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
9	MUSTER	3i1sK	1.000	0.907	4.353	threading_9	------------RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
10	SPARKS	1s1hk	0.397	0.899	4.257	threading_10	------------DNSQVFGVARIYASFNDTFVHVTDLSGKETIARVTGGMKVKADRESSPYAAMLAAQDVAAKCREVGITAVHVKIRAPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR-

Predicted Tertiary Structure


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TM-score=0.918 to 1i94K TM-score=0.879 to native SCOP code=c.55.4.1	TM-score=0.918 to 1i94K TM-score=0.879 to native SCOP code=c.55.4.1	TM-score=0.851 to 1i94K TM-score=0.862 to native SCOP code=c.55.4.1	TM-score=0.910 to 3bbnK TM-score=0.901 to native SCOP code=i.1.1.1	TM-score=0.918 to 1i94K TM-score=0.879 to native SCOP code=c.55.4.1

Experimental Structure

Download 1vs5K

SCOP code=i.1.1.1