Template-based Modeling Results for RL24_ECOLI

Submitted Primary Sequence

>Length 104
MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK
CCCEEECCCEEEEEECCCCCCEEEEEEEECCCEEEEECCEEEEEECCCCCCCCCCCCEEEEEEEEEHHHEEEECCCCCCCEEEEEEEECCEEEEEEECCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK
44020233120000103242330201101222100020010022113223223432120112000000100111332341120102133322021022234329
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK
1	MUSTER	2qozU	1.000	0.981	3.997	threading_1	-AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI-
2	SPARKS	1p85s	1.000	0.952	4.318	threading_2	---KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET--
3	PROSPECT2	3pyoU	0.443	0.933	1.678	threading_3	VKMHVKKGDTVLVASGKYKGRVGKVKEVLKKYAVIVEGVNIVKKAVRVSPK-YPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFENGKKIRVCA------K
4	PPA-I	2qozU	1.000	0.981	6.647	threading_4	-AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI-
5	HHPRED-l	2ftc_N	0.298	0.904	4.778	threading_5	-------GDTVEILEGKDAGKQGKVVQVIRRNWVVVGGLNTHYRYIGKTM--DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFEAGERVRVSTRSGRII-
6	HHPRED-g	3bbo_W	0.330	0.990	4.464	threading_6	HKRHVKVGDTVKVISGGEKGKIGEISKIKHNSTVIIKDLNFKTKHVKSKEE-GEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKIEDVRKVRYLIKTGEIVD
7	SP3	1p85s	1.000	0.952	4.551	threading_7	---KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET--
8	SAM-T99	2qozU	1.000	0.981	4.645	threading_8	-AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI-
9	MUSTER	2aw4U	1.000	0.981	3.627	threading_9	-AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETI-
10	SPARKS	1nkws	0.431	0.981	4.174	threading_10	DKLHFKKGDTVIVLSGKHKGQTGKVLLALPRQKVVVEGVNVITKNVKPSMT-NPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGKTI-

Predicted Tertiary Structure


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TM-score=0.952 to 2qozU TM-score=0.771 to native SCOP code=b.34.5.1	TM-score=0.952 to 2qozU TM-score=0.771 to native SCOP code=b.34.5.1	TM-score=0.571 to 3cmeT TM-score=0.527 to native SCOP code=i.1.1.2	TM-score=0.770 to 2qozU TM-score=0.720 to native SCOP code=b.34.5.1	TM-score=0.952 to 2qozU TM-score=0.771 to native SCOP code=b.34.5.1

Experimental Structure

Download 1vs6U

SCOP code=b.34.5.1