Template-based Modeling Results for RL15_ECOLI

Submitted Primary Sequence

>Length 144
MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCEEEEHHHHHHCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHHCCEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
552221221421332232212121112031013113123132112132102102011112113211313322210101011023032220212112213012232320100122303120102012013101200241212123
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
1	MUSTER	2rdoL	1.000	1.000	4.586	threading_1	MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
2	SPARKS	1nkwj	0.424	0.965	4.591	threading_2	---HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNV-GTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVL
3	PROSPECT2	3pyoL	0.409	0.951	3.403	threading_3	----DLRPNPGANKRRKRVGRGPGSGHGKTATRGHKGQKSRSGGLKDPRFEGGRSTTLMRLPKRGMQGQKRPRYQGVNLKDLARF-EGEVTPELLVRAGLLKKG-YRLKILGEGEA-KPLKVVAHAFSKSALEKLKAAGGEPVL
4	PPA-I	2awbL	1.000	1.000	5.765	threading_4	MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
5	HHPRED-l	2zjr_I	0.428	0.958	5.789	threading_5	---HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNN-VGTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVV-
6	HHPRED-g	2zjr_I	0.428	0.958	5.092	threading_6	---HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNN-VGTTYEVVKLSQLQDLETT-FDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVL
7	SP3	1nkwj	0.432	0.965	4.745	threading_7	---HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNV-GTTYEVVKLSQLQDLEDTTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVE
8	SAM-T99	2rdoL	1.000	1.000	5.746	threading_8	MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
9	MUSTER	2awbL	1.000	1.000	4.399	threading_9	MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE
10	SPARKS	1jj2k	0.252	0.882	3.299	threading_10	----------TSKKKRQRGSRTHGGGSKNRRGAGHRGGRGDAGRDKHEFHNHE------PLGKSGFKRPVQEEAATIDVREIDENDVAEFRVDVRDVVEEADD-ADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVEL

Predicted Tertiary Structure


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TM-score=0.539 to 2rdoL TM-score=0.535 to native SCOP code=c.12.1.1	TM-score=0.484 to 1nzyB TM-score=0.179 to native SCOP code=c.14.1.3	TM-score=0.625 to 1vouM TM-score=0.551 to native SCOP code=i.1.1.1	TM-score=0.475 to 1q82M TM-score=0.447 to native SCOP code=c.12.1.1	TM-score=0.528 to 2awbL TM-score=0.419 to native SCOP code=c.12.1.1

Experimental Structure

Download 1vs6L

SCOP code=c.12.1.1