Template-based Modeling Results for PAND_ECOLI

Submitted Primary Sequence

>Length 126
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
CCHHHHHHHHCCEEEEEECCCCCCCEEECHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECCHHHCCCCCCCEEEEEECCCCCHHHHHCCCCEEEEECCCCCEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
431311102112020020122131000002100210301321100000022121010000213411200001011011012000000000021333103312010000114220221122222336
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPVQVA
1	MUSTER	1pqfA	0.992	0.968	4.292	threading_1	MIRTMLQGKLHRVKVTHADLHYESSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAH-ASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKAIPV---
2	SPARKS	2c45a	0.504	0.897	5.143	threading_2	MLRTMLKSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNK-------------
3	PROSPECT2	2c45A	0.504	0.897	2.378	threading_3	MLRTMLKSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNK-------------
4	PPA-I	2c45A	0.504	0.897	7.079	threading_4	MLRTMLKSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNK-------------
5	HHPRED-l	1pqh_A	0.991	0.913	6.388	threading_5	MIRTMLQGKLHRVKVTHADLHYEGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAH-ASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKR----------
6	HHPRED-g	1pqh_A	0.991	0.913	5.427	threading_6	MIRTMLQGKLHRVKVTHADLHYEGTCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAH-ASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKR----------
7	SP3	2c45a	0.504	0.897	5.148	threading_7	MLRTMLKSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNK-------------
8	SAM-T99	2c45A	0.504	0.897	5.399	threading_8	MLRTMLKSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNK-------------
9	MUSTER	2c45A	0.504	0.897	4.120	threading_9	MLRTMLKSKIHRATVTCADLHYVGSVTIDADLMDAADLLEGEQVTIVDIDNGARLVTYAITGERGSGVIGINGAAAHLVHPGDLVILIAYATMDDARARTYQPRIVFVDAYNK-------------
10	SPARKS	1aw8\.1	1.000	0.905	4.965	threading_10	MIRTMLQGKLHRVKVTHADLHYEG-CAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMK-----------

Predicted Tertiary Structure


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TM-score=0.965 to 1pqfA TM-score=0.996 to native SCOP code=b.52.2.1	TM-score=0.341 to 1vj7A TM-score=0.183 to native SCOP code=a.211.1.1	TM-score=0.868 to 1pqfA TM-score=0.899 to native SCOP code=b.52.2.1	TM-score=0.868 to 1pqfA TM-score=0.899 to native SCOP code=b.52.2.1	TM-score=0.868 to 1pqfA TM-score=0.899 to native SCOP code=b.52.2.1

Experimental Structure

Download 1pqfA

SCOP code=b.52.2.1