Template-based Modeling Results for PAAI_ECOLI

Submitted Primary Sequence

>Length 140
MSHKAWQNAHAMYENDACAKALGIDIISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTITGEA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSHKAWQNAHAMYENDACAKALGIDIISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTITGEA
CCHHHHHHHHHHHCCCHHHHHCCCEEEEEECCEEEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSHKAWQNAHAMYENDACAKALGIDIISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTITGEA
45330121023113211003101010110231101010201230011120000000000010000000112221000010000001102322100010101231420000101012444200010100001022323368
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSHKAWQNAHAMYENDACAKALGIDIISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTITGEA
1	MUSTER	2fs2B	0.895	0.950	3.618	threading_1	LSHKAWQNAHAY-ENDACAKALGIDIISDE---GFAVVTTVTAQLNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTIT---
2	SPARKS	3lbba	0.282	0.886	3.584	threading_2	------------NHLHEIRVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLVSISTGFDAVTLQSSINYLKSGKLGDTLLIDGRCVHDGRTTKVVDVTVTNQLKQEVAKATFTMFVTGKRK----
3	PROSPECT2	3lbbA	0.282	0.886	2.574	threading_3	NH------------LHEIRVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLVSISTGFDAVTLQSSINYLKSGKLGDTLLIDGRCVHDGRTTKVVDVTVTNQLKQEVAKATFTMFVTG----KRK
4	PPA-I	2fs2B	0.821	0.957	4.365	threading_4	SLSHKAWQNAHAYENDACAKALGIDIISDEG---FAVVTTVTAQLNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTIT---
5	HHPRED-l	2fs2_A	0.992	0.907	3.072	threading_5	LSHKAWQNAHA-YENDACAKALGIDIIS-DEGFAVVT-TVTAQ-LNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHR---------
6	HHPRED-g	2fs2_A	0.992	0.907	2.538	threading_6	LSHKAWQNAHA-YENDACAKALGIDIIS-DEGFAVVT-TVTAQ-LNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHR---------
7	SP3	3lbba	0.282	0.886	3.418	threading_7	------------NHLHEIRVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLVSISTGFDAVTLQSSINYLKSGKLGDTLLIDGRCVHDGRTTKVVDVTVTNQLKQEVAKATFTMFVTGKRK----
8	SAM-T99	2fs2B	0.831	0.929	3.052	threading_8	SLSHKAWQNAHAYENDACAKALGIDIISDEGFAVVTTVT---AQLNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQQKTVALFRGKSHRIG-------
9	MUSTER	3lbbA	0.285	0.879	3.414	threading_9	-------------NHHEIRVFENFDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLVSISTGFDAVTLQSSINYLKSGKLGDTLLIDGRCVHDGRTTKVVDVTVTNQLKQEVAKATFTMFVTGKRK----
10	SPARKS	3s4ka	0.183	0.857	3.421	threading_10	---------------VPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAEGGSVVGVNNNTDFVRSISSG-MVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP----

Predicted Tertiary Structure


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TM-score=0.951 to 2fs2B TM-score=0.978 to native SCOP code=d.38.1.5	TM-score=0.952 to 2fs2B TM-score=0.979 to native SCOP code=d.38.1.5	TM-score=0.812 to 1wlvA TM-score=0.799 to native SCOP code=d.38.1.5	TM-score=0.812 to 1wlvA TM-score=0.801 to native SCOP code=d.38.1.5	TM-score=0.959 to 2fs2B TM-score=0.978 to native SCOP code=d.38.1.5

Experimental Structure

Download 1psuB

SCOP code=d.38.1.5