Template-based Modeling Results for NRDI_ECOLI

Submitted Primary Sequence

>Length 136
MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA
CCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHCHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA
4210000002141032003302121120213333413232100000001122222220032012002123122101000010121002000200210032020100010112113200320230022113322444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA
1	MUSTER	3n39C	1.000	0.941	3.654	threading_1	--QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------
2	SPARKS	3n39c	1.000	0.941	4.362	threading_2	--QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------
3	PROSPECT2	3n39C	1.000	0.941	2.540	threading_3	--QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------
4	PPA-I	3n39C	1.000	0.941	6.181	threading_4	--QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------
5	HHPRED-l	1rlj_A	0.325	0.926	3.723	threading_5	AMVQIIFDSKTGNVQRFVNKTGFQQIRKV---DEMDHVDTPFVLVTYTTNFGQ----VPASTQSFLEKY--AHLLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVELFTQEVERVVTKSSAK-
6	HHPRED-g	3n3a_C	1.000	0.963	5.048	threading_6	--QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQRQP---
7	SP3	3n39c	1.000	0.941	4.284	threading_7	--QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------
8	SAM-T99	3n39C	1.000	0.941	6.219	threading_8	--QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------
9	MUSTER	2x2oA	0.440	0.853	3.077	threading_9	M--LVAYDSMTGNVKRFIHKLNMPAVQID----EDLVIDEDFILITYTTGFG----NVPERVLDFLERNN---KLKGVSASGNRNWGDMFGASADKISTKYEVPIVSKFELSGTNNDVEYFKERVREIA-------
10	SPARKS	1rlja	0.323	0.934	3.694	threading_10	AMVQIIFDSKTGNVQRFVNKTGFQQIRK---VDEMDHVDTPFVLVTYTTNFG----QVPASTQSFLEKY--AHLLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVELFTQEVERVVTKSSAKM

Predicted Tertiary Structure


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TM-score=0.814 to 1rljA TM-score=0.945 to native SCOP code=c.23.5.7	TM-score=0.415 to 1hzdA TM-score=0.282 to native SCOP code=c.14.1.3	TM-score=0.814 to 1rljA TM-score=0.945 to native SCOP code=c.23.5.7	TM-score=0.814 to 1rljA TM-score=0.945 to native SCOP code=c.23.5.7	TM-score=0.814 to 1rljA TM-score=0.945 to native SCOP code=c.23.5.7

Experimental Structure

Download 3n3aC

SCOP code=c.23.5.7