Template-based Modeling Results for NAPB_ECOLI

Submitted Primary Sequence

>Length 149
MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQEGAIRMPKEQDRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQEGAIRMPKEQDRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQEGAIRMPKEQDRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK
55333112000100000000000001112223223123122233222412333331222122211101120311312232120020101310341301401200011231321231122100011010221312201222222242328
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQEGAIRMPKEQDRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISPTHFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK
1	MUSTER	1ogyF	0.398	0.826	4.128	threading_1	--------------------------DAPRLTGADRPMSEVAAPPLPETITDDRRVGRNYPEQPPVIPHSIEGYQLSVNANRCLECHRRQYSGLVAAPMISITHFQDREGQMLADVSPRRYFCTACHVPQTNAQPLVTNEFRDMLTLMP
2	SPARKS	1ogyb	0.398	0.826	4.263	threading_2	--------------------------DAPRLTGADRPMSEVAAPPLPETITDDRRVGRNYPEQPPVIPHSIEGYQLSVNANRCLECHRRQYSGLVAAPMISITHFQDREGQMLADVSPRRYFCTACHVPQTNAQPLVTNEFRDMLTLMP
3	PROSPECT2	1ogyB	0.398	0.826	2.442	threading_3	--------------------------DAPRLTGADRPMSEVAAPPLPETITDDRRVGRNYPEQPPVIPHSIEGYQLSVNANRCLECHRRQYSGLVAAPMISITHFQDREGQMLADVSPRRYFCTACHVPQTNAQPLVTNEFRDMLTASN
4	PPA-I	1ogyF	0.398	0.826	5.389	threading_4	--------------------------DAPRLTGADRPMSEVAAPPLPETITDDRRVGRNYPEQPPVIPHSIEGYQLSVNANRCLECHRRQYSGLVAAPMISITHFQDREGQMLADVSPRRYFCTACHVPQTNAQPLVTNEFRDMLTLMP
5	HHPRED-l	1jni_A	0.742	0.416	7.082	threading_5	--------------------------------------------------------------QPPMVPHSVANYQVTKNVNQCLNCHSPENSRLSGATRISPTHFMDRDGKV-----PRRYFCLQCHVS--------------------
6	HHPRED-g	3ml1_B	0.443	0.711	6.239	threading_6	----------------------------GLVDAMRGPANEPRAPLLYPTENK---------MQPPTIPHKIDGYQLDKDFNRCMFCHART------AIPVSITHYMDRDNNVLADVSPRRYFCTQCHVPQADTKPLIGNNFVDVDTILK
7	SP3	1ogyb	0.398	0.826	3.744	threading_7	--------------------------DAPRLTGADRPMSEVAAPPLPETITDDRRVGRNYPEQPPVIPHSIEGYQLSVNANRCLECHRRQYSGLVAAPMISITHFQDREGQMLADVSPRRYFCTACHVPQTNAQPLVTNEFRDMLTLMP
8	SAM-T99	1ogyF	0.398	0.826	7.077	threading_8	--------------------------DAPRLTGADRPMSEVAAPPLPETITDDRRVGRNYPEQPPVIPHSIEGYQLSVNANRCLECHRRQYSGLVAAPMISITHFQDREGQMLADVSPRRYFCTACHVPQTNAQPLVTNEFRDMLTLMP
9	MUSTER	3ml1B	0.422	0.732	3.651	threading_9	----------------------------------GLVDAMRGPTAIANEPRAPLLYPTENKMQPPTIPHKIDGYQLDKDFNRCMFCHA------RTAIPVSITHYMDRDNNVLADVSPRRYFCTQCHVPQADTKPLIGNNFVDVDTILK
10	SPARKS	1jnia	0.742	0.416	2.701	threading_10	--------------------------------------------------------------QPPMVPHSVANYQVTKNVNQCLNCHSPENSRLSGATRISPTHFMDRDGKV-----PRRYFCLQCHVS--------------------

Predicted Tertiary Structure


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TM-score=0.826 to 1ogyF SCOP code=a.138.1.3	TM-score=0.387 to 1axnA SCOP code=a.65.1.1	TM-score=0.826 to 1ogyF SCOP code=a.138.1.3	TM-score=0.761 to 1ogyF SCOP code=a.138.1.3	TM-score=0.826 to 1ogyF SCOP code=a.138.1.3