Template-based Modeling Results for LPP_ECOLI

Submitted Primary Sequence

>Length 78
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
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--------10--------20--------30--------40--------50--------60--------70

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
CCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
552200110000000000110122221220221033022102301310310211023012101200210120034245
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--------10--------20--------30--------40--------50--------60--------70

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
1	MUSTER	1eq7A	1.000	0.718	2.348	threading_1	---------------------SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYR-
2	SPARKS	1t8za	0.720	0.641	1.554	threading_2	------------------------AKWDQWSSDWQTWNAKWDQWSNDWNAWRSDWQAWKDDWARWNQRWDNWAT----
3	PROSPECT2	1eq7A	0.982	0.718	0.945	threading_3	---------------------SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKY-R
4	PPA-I	1eq7A	1.000	0.718	3.021	threading_4	---------------------SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYR-
5	HHPRED-l	1jcd_A	0.780	0.641	5.070	threading_5	-----------------------NAKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADNAA-----
6	HHPRED-g	1jcd_A	0.780	0.641	4.424	threading_6	-----------------------NAKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRADNAA-----
7	SP3	1t8za	0.720	0.641	0.976	threading_7	------------------------AKWDQWSSDWQTWNAKWDQWSNDWNAWRSDWQAWKDDWARWNQRWDNWAT----
8	SAM-T99	1eq7A	1.000	0.718	4.336	threading_8	---------------------SSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYR-
9	MUSTER	2kubA	0.171	0.974	0.975	threading_9	ENLDKMISEAEVLNDMAARKLLDAEQQLELMKSLVATQSQLEATKNLIGATVADLQIAYTTLGNNTQALGNELIKL--
10	SPARKS	1nyha	0.137	0.936	1.042	threading_10	-----LSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINK

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.648 to 1kilE TM-score=0.637 to native SCOP code=h.1.15.1	TM-score=0.648 to 1kilE TM-score=0.637 to native SCOP code=h.1.15.1	TM-score=0.579 to 2fo1D TM-score=0.514 to native SCOP code=a.137.14.1	TM-score=0.612 to 3b5nA TM-score=0.581 to native SCOP code=h.1.15.1	TM-score=0.648 to 1kilE TM-score=0.637 to native SCOP code=h.1.15.1

Experimental Structure

Download 1eq7A

SCOP code=h.1.16.1