Template-based Modeling Results for CYOD_ECOLI

Submitted Primary Sequence

>Length 109
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
5432222222110102100100000000100000001111022010000000000000000010001121323322212110000111011000001111222221223
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPAVILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMMMH
1	PPA-I	2l35A	0.190	0.578	1.355	threading_1	------CSTVSPGVLAGIVVGDLVLTVLIALAVYFLGRLGTAEVLGIISIVLVATVLKTIVLIPFLEQN----------------------------------------
2	PPA-I	2ksfA	0.183	0.853	1.011	threading_2	MVQIQG-----------SVVAAALSAVITLIAMQWLMAFDAANGVVVVALFYPSVVATVINVVSFDLFFIAPRGTLAVSLLTFAVMLTVGLVIGNLTAGVRYQA-----
3	MUSTER	2bg9C2	0.174	0.789	0.855	threading_3	L-------------VINFITPCVLISFLAALAFYLPAESGEKMSTAICVLLAQAVFLLLTSQRL----ETALAVPLIGKYLMFIMSLVTGVVVNCGIVL-NFH-----F
4	SPARKS	2l35a	0.206	0.578	0.864	threading_4	-------------------------------------CSTVSPGVLAGIVVGDLVLTVLIALAVYFLGRLGTAE---VLGIISIVLVATVLKTIVLIPFLEQN------
5	PROSPECT2	2iu5A	0.097	0.945	0.659	threading_5	MEKSIINDNSDYYGWQNELLLLLRYLDENQIFYQKIFVIDKNFEHFFLIQWENLLDKVIFDQE------KKSDYHWSDLEKSFICRYNAAAICAITRESIIRGNSLIFE
6	PPA-I	3siaA2	0.065	0.844	0.912	threading_6	ARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFAMAFCDLNCWIAICAFAAQTRSAYQMIFMNPYYGPMKPFNPMEFGKFLDVVTSLLE-----------------
7	HHPRED-l	3rhw_A	0.138	0.862	0.631	threading_7	VSWVSF--WFDRTAI-PARVTLGVTTLLTMTAQSAGINSQLPPVSCMTFIFCALLEFALVN--HIANAGTT---EWNDISLISRALFPVLFFVFNILYRFGH-------
8	HHPRED-g	2rh1_A	0.198	0.881	0.775	threading_8	------------DEVWVVGMGIVMSLIVLAIVFTAIAKERL-QTVTNYFITSLACADLVMGLAVVFGAAHILMKMWTFGNFWFWTSIDVLCVTASIEITSPFKYQSLLT
9	SP3	1k4cc	0.120	0.917	0.613	threading_9	--------SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAITYPRALWWSVETATVGYGDL-YPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH
10	SAM-T99	2e21A	0.191	0.817	0.758	threading_10	--ALQNDEKIFSGERRVAFSGGVDSVVLTDVLLKLKNYFSL------------------VALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRAFAKENRMSL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.543 to 1tuaA SCOP code=d.51.1.1	TM-score=0.529 to 1tuaA SCOP code=d.51.1.1	TM-score=0.595 to 2j0oA SCOP code=a.250.1.1	TM-score=0.641 to 1sumB SCOP code=a.7.12.1	TM-score=0.294 to 1r6vA SCOP code=c.41.1.1