QUARK Ab Initio Results for YQJA_ECOLI

Submitted Primary Sequence

>Length 220
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCTTTTHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEETTTTHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNWLSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMSGLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGNRG
3410110010001101200010001000000000000022000100211110000000000121210000000000000000000000001101221012111121323102101200341110000001000001000000000020200100000000000000000000000020220120021000000000000000000000011123222445
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.492 to 1et1A SCOP code=j.15.1.1	TM-score=0.466 to 2gtvX SCOP code=a.130.1.3	TM-score=0.479 to 2r2vA SCOP code=h.1.3.1	TM-score=0.475 to 1h99A SCOP code=a.142.1.1	TM-score=0.504 to 1kd9A SCOP code=h.1.3.1

Estimated TM-score of Model 1: 0.3790 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4192 ±0.0778