QUARK Ab Initio Results for YEDD_ECOLI

Submitted Primary Sequence

>Length 137
MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP
CHHHHHHHHHHHHHCCCCTTTTHHHHCCTTTTTTCCEEETTTTTTTTTTHHHEEEEEECTTTTECCHHHHHHHHHTTTTTEETTTTEEEEEEEEEEEEEEETTTTETTTTTEEEECCCCCHHHHHHHHHCCCCTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP
44210100010001001303212201302022202010213133411113300000000332321102101200123120011232001011211002011322101111010121422222002003512233324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.417 to 1p4pA SCOP code=b.76.1.1	TM-score=0.409 to 1wdyA SCOP code=d.211.1.1	TM-score=0.411 to 2p1xA SCOP code=d.82.2.1	TM-score=0.417 to 2ftxB SCOP code=d.300.1.2	TM-score=0.434 to 2ga5A SCOP code=d.82.2.1

Estimated TM-score of Model 1: 0.2748 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3077 ±0.0778