MetaGO result for job id PF04956

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>UniRef100_C3KQX1/10-99 (90 residues)
IASVALAAAIVSVAMVQPAFAQATGGIESVLQNIVDMLTGNVAKLLATIAVIIVGIAWMF
GYLDLRKTAYVVLGIGIIFGASEIVSTISG

Download query sequence and structure

Proteins with similar structure

Top 10 structural analogs in PDB (as identified by TM-align)

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	Download Alignment
1	3g9dA	0.61	2.97	0.096	0.911	Download
2	2wodA	0.60	3.08	0.048	0.922	Download
3	1e6yA	0.60	2.79	0.069	0.889	Download
4	4oiyA	0.60	3.57	0.047	0.944	Download
5	2yzvA	0.59	3.30	0.085	0.911	Download
6	1e6vA1	0.58	2.95	0.057	0.889	Download
7	3sqgA1	0.58	3.03	0.057	0.889	Download
8	1ku1A2	0.57	3.18	0.049	0.889	Download
9	3hfwA	0.57	3.50	0.060	0.922	Download
10	1t5jA	0.57	3.07	0.060	0.911	Download

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)

GO term	Cscore^GO	Name
GO:0016799	0.03	hydrolase activity, hydrolyzing N-glycosyl compounds

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by Cscore^GO:

[0.13,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Biological Process (BP)

GO term	Cscore^GO	Name
GO:0009987	0.43	cellular process
GO:0030255	0.13	protein secretion by the type IV secretion system
GO:0006464	0.04	cellular protein modification process
GO:0071941	0.03	nitrogen cycle metabolic process

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by Cscore^GO:

[0.08,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Cellular Component (CC)

GO term	Cscore^GO	Name
GO:0043684	0.04	type IV secretion system complex

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by Cscore^GO:

[0.14,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Reference:

Chengxin Zhang, Peter L Freddolino, and Yang Zhang. (2018) MetaGO: A Structure and Protein-Protein Interaction Network Based Pipeline for Automated Protein Function Annotations. Journal of Molecular Biology.

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