D-I-TASSER Q9Y6F7-D1

D-I-TASSER results for Q9Y6F7-D1

[Click result.zip to download all results on this page]

Input Sequence in FASTA format

>Q9Y6F7 (541 residues)
MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTE
KQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRR
KAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVFKVTE
GKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATRKGIVVLIDPLAANG
TTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFTQIVL
STRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRN
TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTT
FGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQI
KELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDE
F

Predicted Secondary Structure

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF
Prediction	CCCCHHHHHHHHHHHHCCCCCSSSSSSSCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSSCCSSSSSSCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCSSSSSSCCCCCSSCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCSSSSSCCSSSHHHHHHHHHCCSSSSSCCCSSSCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCSSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
Confidence	9962122566777641458866999997488998886570455566899999973224443013445545666888522456767873223568998632468898876556553224677777655445455467887667788975566575224566556776656456768554555565555578764355656666778888776654565434456777772122224431487532354313314632112444577631112323345667665444999998998999955792342689999999999999998619963999977997353373889998524344136899999999999999981899899995772331889999729989980897575822311769997556798999819999999997999789999981998487474789999999999999289999999999999874299999999999999999559568999999980289999
	H:Helix; S:Strand; C:Coil

Predicted Solvent Accessibility

Sequence	20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| \| MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF
Prediction	7535414033013415546131100010121437623031340013034002403533335545453444443344544454444545524464454434435442565543544544455354424443514243332444425434545444520442633542553564334373134434441444424433434445424331352444143432443434421131143143434241342145345354413444443222332323343444304143020125420000000210531400144005002400530472300000001011000000003301743454443223401520240040036051000000000002000000000000000340200000030000000100000001003210100000034130520210100010034740162025004300730130000002003302723044004201400330230541100140135325267
	Values range from 0 (buried residue) to 8 (highly exposed residue)

Predicted Contact, Hydrogen and Distance Map Used in D-I-TASSER simulation

Contact Map

Distance Map

Hydrogen bond networks

D-I-TASSER simulation is guided by the consensus contact map (left figure), distance map (middle figure) and Hydrogen bond network (right figure) derived based on confidence scores of AttentionPotential. In the contact, distance map and hydrogen bond networks, the axes mark the residue index along the sequence. For the contact map, each dot represents a residue pair with predicted contact, while for the distance map and hydrogen bond network, a color scale represents a distance of 1-20+ angstroms or a angle of 0-180 degree.

Top 10 threading templates used by D-I-TASSER

Rank

PDB
hit

ID1

ID2

Cov

Norm.
Zscore

Download
alignment

                  20                  40                  60                  80                 100                 120                 140                 160                 180                 200                 220                 240                 260                 280                 300                 320                 340                 360                 380                 400                 420                 440                 460                 480                 500                 520                 540

                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |                   |

SS
Seq

CCCCHHHHHHHHHHHHCCCCCSSSSSSSCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSSCCSSSSSSCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCSSSSSSCCCCCSSCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCSSSSSCCSSSHHHHHHHHHCCSSSSSCCCSSSCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCSSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
MASQEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKLEKLDPIAADQQDTVVFKVTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATRKGIVVLIDPLAANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF

2fw2F

1.00

0.48

13.46

1.64

SPARKS-K

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF

6eqoA

0.12

0.11

4.09

0.79

MapAlign

LIEGNPAWAFETWTGWDASSAAPITIIYTSGSTGKPKGVVHVHGGYASGVAATMPAAFGAEPGDVMYVVADPGWITGQSYQIAASLLSRVTTVITEGSPVFPHAGRFASIIERYGVNVFKAGVTFLKSVMQNPENLKDIQRYDLSSLKVATFCAEPVSPAVQAFAMEHITHRYINSYWHGRSDDVINVSGHRIGTEEIEGAILRDKALDPNSPVGNVIVIGAPHSQKGVTPIAFVTVPQDFIELSEFPETRSGKYMSLDELARAVDGWKRRQSLSDTQALFERYRFFTIQYNKRVATVTVKN--PPVNALNERALDELVIIAEHLARKDVAAVVFTGSGASFVAGADIRQMLEEV--NSVEEAKALPDNAQLAFRTIEEMDKPCIAAIQGVALGGGMEFALACHYRVAEPKARFGQPEINLRLLPGYGGTQRLPRLLGLRDALDLILGGRAIDADAALAVGAVDALADSDNALSHAHAMVREFVRSGDDSALGKAFAARKTQTQSWLQRILNQLEWAGRDKAGERALDAVRTGWTQGMTAG

6j0pA

0.15

0.13

4.35

0.28

CEthreader

KYKTLIIHPGPPGDRGPNKGERIWGVTLLEASEEYDAGDVWAYRTFPMR-------------------------------------------------------------FARKASIYRNEVTEGVVECVLEALENFERGDFKPTPQKEHWWNPKMEQELRRVDWEQDDTKTVLRKVYASDSQPGASSKVLGKEVLLFNAYPEEELKGKPGEVLALRDEAVCIGTRDGAVWITHMRERKKESIKLPSARVLGEFLKGVKE----------DPIKPWEKVDFKTYREILYEEEDGIGFIHFNF---YNGAMSTEQCYRLLETIKYAKKRPVKAIVLLGSEDFFSNGMNLNTIENA--ESPADESWRNINAIDDVCEEILKTPKLTVAGMQGNAGAGGVFLALTCDLVFAREGVVLNPHYKNIGNYGSEFWTYTLPKRVGWEKGKEVMENRMPISSKKAFEIGLIDGVFGKTEFRQRLKERIKNFINSKDFYEFIEKKKKERTSGEWLEEIQKCREHELEKMKLNFYGFDTSYHIARYYFVRR

6eqoA

0.10

3.61

0.97

EigenThreader

GGYASGVAATMPAAFGAEPGDVMYVVITEGSPVFPHAGRFASIIERYGFLKSVMENLKDIQRYDLSSLAEPVSTHRYINSYWATEHGGMVDADGFPLEADAPLPWIMGDVWVEDADGSSNGPVEYERDTPWRVAEDGEKPYPYLTRTIWGDVENFTRVAGGWRGDEVRYADTYW----------RRWKGAWADKALDPNSPEGRRLTQDDKRRLTDLVRTEKGAVAVPQDFIEL-----SEFPETRSGKYMRRMVRAVVEGGEVLRNPERRQSLSDTQALFERYTIQYNLVAPGKATVTVKNPP--VNALNERALDELVIIAEHLARKDDVAVVFTGSGSFVAGA-DIRQMLEE--VNSVEEAKALPDNAQLAFRTIEEMDKPCIAAIQGVALGGGMEFALACHYRVAEPKARFGQPEINLRLLPGYGGTQRLPRLLGLRDALDLILGGRAIDADAALAVGAVDALADGSDNALSHAHAMVREFVRSGDDSALGKAFAARKTQTQSWHLDAVRTGWTQGMTAGLECEAQRFAEAIIDPEGG

2fw2F

1.00

0.48

13.46

1.18

MUSTER

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ITYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF

6eqoA

0.15

0.09

3.16

0.83

DEthreader

---------------------------------------------------------------------------------ISDRDQLRYDDAASGHGDEA----E---------GAEPGDSRVNVKVATFYINPLEADAHT-----------------------------------GEKG---------------------------------DFA---------------SLHGRSDDVINVSGHR------------------------SQKGVSSDTERYRFTIQYNLVKRVATVTVKNP-PVNALNERALDELVIIAEHLARKDVAAVVFTGSGASFVAGAD-IRQMLEEV-NSVEEAKALPDNAQLAFRTIEEMDKPCIAAIQGVALGGGMEFALACHYRVAEPKARFGQPEINLRLLPGYGGTQRLPRLLALRDALDLILGGRAIDADAALAVGAVDALADGSDNLSHAHAMVREFVSGDD-GKFAARKTQTQSWHEGMTAGLECEAQRFA-EA----DPEGGKTGIQQFMDKS

5mrc88

0.21

0.10

3.17

1.17

HHsearch

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APPVLFTVQDTARVITLN-RPKKLNALNAEMSESMFKTLNEYAKSDTNLVILKSSNRSFCAGGDVATVAIFNFNKEFAKSIKFFTDEYSLNFQIATYLKPIVTFMDGITMGGGVGLSIHTPFRIATENTKWAMPEMDIGFFPDVGSTFALPRIVNSQMALYLCLTGEVVTGADAYMLGLASHYVSSENLDAFAQEIKTKLLTKSPSSLQIALRLVQENSRDHIESAIKRDLYTAANMCMLVEFSEATKHKLIDKPYPW

2fw2F

1.00

0.48

13.35

2.54

FFAS-3D

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF

2fw2A

1.00

0.48

13.35

2.54

CNFpred

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF

5i6fA

0.12

0.07

2.40

0.67

DEthreader

GNAKIG-------WTVIPSLAAKQPA-------------I--GECIDYNINARGRKFIARKMGIPR------------GARLGLALMFVAFKYL-------------------ITE-IITIV-----LG--C---------------------------------------T-L---------------------------------------------VTCRSVGIGAY-V----------E--GQPIILTGAPALNSLLGREVYT--SNLQLGGTSLTALGGRTVVGRARIPMGVIAVETRTEAGGVWYPNSAFKTAQAINDFNYGEQLPLMILAN---WR-GFS--GG-QRD---MY-NE--VLKYGSFIVDALTRFEKPIFIYIPGELRGGSWVVDPINMEMYADEEARGGVLEGI--I------------------------ADLHDRAGRMKAKGVIRQSLQWRQSRRFFYWRVRRRLIEDDILRRIEE-----NTSLA------------------------------------

(a)	ID1 is the number of template residues identical to query divided by number of aligned residues.
(b)	ID2 is the number of template residues identical to query divided by query sequence length.
(c)	Cov is equal the number of aligned template residues divided by query sequence length.
(d)	Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold.
(e)	Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz).
(f)	Template residues identical to query sequence are highlighted in color.

Top 1 final models from D-I-TASSER

Click to view	Rank^a	Download	Estimated TM-score^b
	1	model1.pdb.gz	0.4739

(a)

D-I-TASSER simulations generate a large ensemble of structural conformations, i.e. decoys. These decoys are clustered by SPICKER based on pairwise structure similarity to report up to five final models from the five largest clusters. Models are ranked in descending order of cluster size. If the simulations converge well, it is possible to have less than 5 models generated, which is usually an indication of good model quality.

(b)

The model confidence is quantitatified by estimated TM-score (eTM-score), calculated based on significance of threading template alignments, contact map satisfaction rate, mean absolute error between distance of model and distance of AttentionPotential, and convergence of D-I-TASSER simulations. eTM-score is typically in the range of [0, 1], with higher eTM-score signifies higher model confidence.

Proteins with similar structure

Top 10 structural analogs in PDB (as identified by TM-align)

Rank	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	Download Alignment
1	6eqoA	0.53	5.77	0.094	0.702	model1_6eqoA.pdb.gz
2	3n6rB	0.41	6.46	0.063	0.580	model1_3n6rB.pdb.gz
3	1x0uA	0.41	6.31	0.063	0.575	model1_1x0uA.pdb.gz
4	6j0pA	0.41	5.63	0.097	0.538	model1_6j0pA.pdb.gz
5	1on3E	0.41	6.43	0.090	0.579	model1_1on3E.pdb.gz
6	5infA	0.41	6.18	0.068	0.568	model1_5infA.pdb.gz
7	1xnvA	0.41	6.29	0.068	0.573	model1_1xnvA.pdb.gz
8	6ybpA	0.41	6.59	0.058	0.579	model1_6ybpA.pdb.gz
9	3ff6A	0.40	6.82	0.050	0.592	model1_3ff6A.pdb.gz
10	2a7sA	0.40	6.39	0.057	0.569	model1_2a7sA.pdb.gz

(a)	Query structure is shown in cartoon, while the structural analog is displayed using backbone trace.
(b)	Ranking of proteins is based on TM-score of the structural alignment between the query structure and known structures in the PDB library.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Gene Ontology (GO) Terms

Molecular Function (MF)

GO term	Cscore^GO	Name
GO:0003824	0.87	catalytic activity
GO:0016829	0.56	lyase activity

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Molecular Function. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Biological Process (BP)

GO term	Cscore^GO	Name
GO:0044699	0.95	single-organism process
GO:0009987	0.90	cellular process
GO:0008152	0.88	metabolic process
GO:0071704	0.86	organic substance metabolic process
GO:0044237	0.85	cellular metabolic process
GO:0044238	0.81	primary metabolic process
GO:0044763	0.72	single-organism cellular process
GO:0044710	0.72	single-organism metabolic process
GO:0044281	0.70	small molecule metabolic process
GO:0006629	0.62	lipid metabolic process
GO:1901575	0.61	organic substance catabolic process
GO:0044712	0.61	single-organism catabolic process
GO:0044255	0.61	cellular lipid metabolic process
GO:0044248	0.61	cellular catabolic process
GO:0019752	0.61	carboxylic acid metabolic process
GO:0016054	0.60	organic acid catabolic process
GO:0006631	0.60	fatty acid metabolic process
GO:0009062	0.59	fatty acid catabolic process

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Biological Process. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Cellular Component (CC)

GO term	Cscore^GO	Name
GO:0044444	1.00	cytoplasmic part
GO:0043229	0.96	intracellular organelle
GO:0043227	0.96	membrane-bounded organelle
GO:0043231	0.95	intracellular membrane-bounded organelle
GO:0005634	0.68	nucleus

Download full result of the above consensus prediction.

Click the graph to show a high resolution version.

(a)

Cscore^GO is the confidence score of predicted GO terms. Cscore^GO values range in between [0-1]; where a higher value indicates a better confidence in predicting the function using the template.

(b)

The graph shows the predicted terms within the Gene Ontology hierachy for Cellular Component. Confidently predicted terms are color coded by Cscore^GO:

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted Enzyme Commission (EC) Numbers

Top 5 enzyme homologs in PDB

Rank	Cscore^EC	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	EC Number	Predicted Active Site Residues
1	0.060	2fw2F	0.385	3.44	0.841	0.434	2.3.1.48	418
2	0.060	1qbaA	0.373	7.38	0.043	0.604	3.2.1.52	NA
3	0.060	2gtrA	0.380	3.55	0.652	0.432	2.3.1.48	418
4	0.060	1bxrA	0.358	7.47	0.036	0.569	6.3.5.5	NA
5	0.060	1xnvA	0.408	6.29	0.068	0.573	6.4.1.3	394,396

	Click on the radio buttons to visualize predicted active site residues.
(a)	Cscore^EC is the confidence score for the Enzyme Commission (EC) number prediction. Cscore^EC values range in between [0-1]; where a higher score indicates a more reliable EC number prediction.
(b)	TM-score is a measure of global structural similarity between query and template protein.
(c)	RMSD^a is the RMSD between residues that are structurally aligned by TM-align.
(d)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(e)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

Predicted Ligand Binding Sites

Template proteins with similar binding site:

Rank	Cscore^LB	PDB Hit	TM-score	RMSD^a	IDEN^a	Cov.	BS-score	Lig. Name	Download Complex	Predicted binding site residues
1	0.01	2x24A	0.399	6.61	0.046	0.577	0.14	X24	complex1.pdb.gz	303,394,395
2	0.01	3h0sB	0.400	6.73	0.068	0.582	0.34	B38	complex2.pdb.gz	299,335,339
3	0.01	3h0sA	0.403	6.74	0.070	0.588	0.30	B38	complex3.pdb.gz	299,339,400
4	0.01	1uysB	0.396	6.64	0.069	0.571	0.31	H1L	complex4.pdb.gz	301,390,391
5	0.01	3tvuC	0.400	6.76	0.066	0.586	0.21	B37	complex5.pdb.gz	288,300,342,394
6	0.01	1w2xC	0.402	6.67	0.075	0.582	0.32	RCP	complex6.pdb.gz	308,315,392,393,395,396,400
7	0.01	3h0qB	0.400	6.54	0.075	0.577	0.27	B37	complex7.pdb.gz	299,338,339,396,397,399
8	0.01	3h0jA	0.402	6.74	0.074	0.586	0.27	B36	complex8.pdb.gz	299,338,339,340,395,396
9	0.01	3h0jC	0.401	6.58	0.071	0.579	0.23	B36	complex9.pdb.gz	299,338,339,340
10	0.01	3ff6B	0.403	6.78	0.046	0.590	0.24	RCP	complex10.pdb.gz	298,339,392,393,395,396

	Click on the radio buttons to visualize predicted binding site and residues.
(a)	Cscore^LB is the confidence score of predicted binding site. Cscore^LB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction.
(b)	BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
(c)	TM-score is a measure of global structural similarity between query and template protein.
(d)	RMSD^a the RMSD between residues that are structurally aligned by TM-align.
(e)	IDEN^a is the percentage sequence identity in the structurally aligned region.
(f)	Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein.

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References:
1.	Wei Zheng, Chengxin Zhang, Yang Li, Robin Pearce, Eric W. Bell, Yang Zhang. Folding non-homology proteins by coupling deep-learning contact maps with I-TASSER assembly simulations. In preparation, 2020.