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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.02 | 2h9pA | 0.497 | 2.56 | 0.164 | 0.536 | 0.18 | III | complex1.pdb.gz | 212,213,214,270,538 |
| 2 | 0.02 | 2xl3B | 0.497 | 2.55 | 0.164 | 0.536 | 0.14 | III | complex2.pdb.gz | 210,230,232 |
| 3 | 0.02 | 2h6nA | 0.497 | 2.55 | 0.164 | 0.536 | 0.38 | III | complex3.pdb.gz | 256,271,299,315,361,538 |
| 4 | 0.02 | 3eg6A | 0.497 | 2.57 | 0.164 | 0.536 | 0.27 | III | complex4.pdb.gz | 212,230,252,255,271,525 |
| 5 | 0.02 | 2h6kA | 0.498 | 2.61 | 0.167 | 0.538 | 0.20 | III | complex5.pdb.gz | 212,213,230 |
| 6 | 0.02 | 2o9kA | 0.497 | 2.57 | 0.164 | 0.536 | 0.20 | III | complex6.pdb.gz | 217,218,227,266,309 |
| 7 | 0.02 | 3smrC | 0.496 | 2.55 | 0.162 | 0.534 | 0.19 | NP7 | complex7.pdb.gz | 212,213,235,272 |
| 8 | 0.02 | 3pslA | 0.489 | 2.48 | 0.164 | 0.525 | 0.18 | III | complex8.pdb.gz | 213,234,235,251 |
| 9 | 0.02 | 3pslB | 0.489 | 2.50 | 0.164 | 0.525 | 0.13 | III | complex9.pdb.gz | 215,216,217,538 |
| 10 | 0.02 | 2ovr1 | 0.577 | 4.22 | 0.120 | 0.674 | 0.20 | III | complex10.pdb.gz | 167,178,181,184,185,188,189,195,197 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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