Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSCCCCCCCCCSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSRPATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDLLCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK |
1 | 3qf7A2 | 0.07 | 0.07 | 3.00 | 0.48 | CEthreader | | LTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNRNAVDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPTSVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEK |
2 | 1m56A | 0.05 | 0.05 | 2.26 | 0.53 | EigenThreader | | FMSTNHKDIGVLYLFTGGLVGLISVAFTVYMRMELMAKGFFQSLGFGNYFMPLHIGAPDMAFPRMNNLSYWLYVAGTSLAVASGSGIGGYSTDLAIFAVHLSGASSILGAINMITTFLNMRAPGMGTTFFQPSGGGDYIIVLPAFGIVSHVIATFAKKPIFGYLPMVYAMVAIGVLGFSWIATMWGGSIELKTPMLWALGFLFLFTVGDTYYVVAHFHYVMSLGAVFGIFAKLHFWMMFVGANLTFFPQHFLGRQGM |
3 | 3kdpB | 0.11 | 0.11 | 3.78 | 0.48 | FFAS-3D | | SEKKELGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVML---------LTISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVRFLEKYKDLAQKDDMIFEDCGNVPSELKERGEYNNERGERSGLNDETYGYKDGKRVLGFKPKPPKNESLETYPVMKYNPYVLPVHCTGKRDEDKEKEYFGLGGYPGFPLQYYPYYGKLLQPKYLQ----PLMAVQFTNLTMDTEIRIECKAYGENIGYSEKDR- |
4 | 3j2k71 | 0.09 | 0.08 | 3.07 | 1.09 | SPARKS-K | | SVVAPPGAPKKEHVNVVF-----IGHVS--TIGGQIMYLTGMVDKRTLEKYEREAKEKNRE----TWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDHKSFVASQADLAVLVISARKGEFETGFEKGGQTREHAMLKTAGVKHLIVLINKMD---DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGLKEQSDFCPWYIG---LPFIPYLDNLPNFNRSVDG----------------- |
5 | 5d06A | 0.04 | 0.03 | 1.63 | 0.83 | DEthreader | | -----P-QHRGNSPYTDIVRIDVAELSLIR-L--RH-GR--SYKFV-LD-----------DIEDSEMRTGWYLVATFKAAF----------RELTGFDIGFTSFE-TQQLGIDDSLDHFIRFLVVGIMYGCRSLATSSRGDAWFFVQAIQDVT--G-VSLLQEKTIIIYEILRH-IGGNCGTMDPGTPREDEQFRPNFTIAMVVAPEFPAAIEADQLR--V------GMRTLDPDNYRPGPEWVCY-F-----FNLT |
6 | 6lcpA | 0.06 | 0.06 | 2.58 | 0.97 | MapAlign | | VIFPIFGGVNPGLNSVPLIVIITVTAIKDAIEDYRRTILDIELNNAPVHRLSFHKDAWKNLVVGDFVRIYNDDELPADIIILATSRNTEWALGVVVFTGCIPKSWNISDDVGQIEYIFSDKTGTLTQNVMEFKKATINGQPYGEAYTEAQAGMDRRRGINVEEEAKVIREEIAAAKVRAIRGLREGFTVLGMSDGGINVNVMGKDMHFPVLSIRMSTIVRMPDGRILLFCKGADGLRTLCIAERELSEEEYREWRRE |
7 | 2blmA | 0.13 | 0.12 | 4.05 | 0.61 | MUSTER | | DDFAKLE--EQFDAKLGIFATVAYRP-STI---ALTVGVLL---QQKSIEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELADASLRYSD-----NAAQNLILKQIGGPESLKKELRKVTNPERFEPELNEVNPGETQDTSTARA---VTSLRAFALEDKLP--SEKRELLIDWMKRNTTGDALIRAGVPDGWEVAD-AASYGTRNDIAIIWPPKGDPVV----AVLSSKKDAKYDDKLIAEATKVKALNMNGK- |
8 | 6jxrf | 0.09 | 0.04 | 1.63 | 0.79 | HHsearch | | ---------------------------------------------------------------QTPYKVSISGTTV---ILTCPQYP--GSEILWQHNDKNIGGDEDD-----------------------KNIGSDEDHLSLKEF-----S---ELEQSGY--------------YVCYPGSK-PEDA-------NFYLYLRARVCEN---CMEM-DVMSVATIVIVICITGG--LL-LLVYYWSKNRK------- |
9 | 4pmwA2 | 0.08 | 0.08 | 3.21 | 0.48 | CEthreader | | ARDLNDALACRRLTDGTFEVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSLNPMTDKLTFSVIWKLTPEGKILEEWFGRTIIRSCEELPPISPEHSVEEVHQAVLNLHSIAKQLRRQRFVDGALRLDQLKLAFTLDHETGLPQGCHIYEYEEFMLLANMAVAHKIFRTFPEQALLRRHPPPQTKMLSDLVEFCDQMGLPMDVSSAGALNKSLTKTFGDDKYSLARKEVLTNMYSRPMQM |
10 | 6cc4A | 0.05 | 0.05 | 2.35 | 0.53 | EigenThreader | | AEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAGMLAAPWVIMVTAPGFADTADKFALTSQLLKITFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPRINFHDFASFLASGSVSWMYYADRLMEFPSGVLGVALGTILLPSLSKSFASYNRLMDWGLRLCFLLALPSAVALGILSGPLTVSLFQYGKFTAFDALM---TQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
|