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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 1bxrA | 0.327 | 8.84 | 0.047 | 0.518 | 0.16 | ANP | complex1.pdb.gz | 549,575,662,663,714 |
| 2 | 0.01 | 1ce8E | 0.327 | 8.92 | 0.045 | 0.520 | 0.19 | IMP | complex2.pdb.gz | 524,638,662,664 |
| 3 | 0.01 | 1ofdA | 0.345 | 9.28 | 0.049 | 0.568 | 0.13 | FMN | complex3.pdb.gz | 595,661,662,663,672 |
| 4 | 0.01 | 1ofdA | 0.345 | 9.28 | 0.049 | 0.568 | 0.38 | F3S | complex4.pdb.gz | 550,551,552,553,557,559,606,607 |
| 5 | 0.01 | 2vdcB | 0.347 | 8.70 | 0.041 | 0.544 | 0.17 | OMT | complex5.pdb.gz | 574,575,576 |
| 6 | 0.01 | 1jdbH | 0.327 | 8.92 | 0.046 | 0.520 | 0.27 | GLN | complex6.pdb.gz | 630,631,632 |
| 7 | 0.01 | 1a9x0 | 0.327 | 8.89 | 0.038 | 0.520 | 0.17 | III | complex7.pdb.gz | 547,548,549,551 |
| 8 | 0.01 | 1ea0A | 0.346 | 8.77 | 0.058 | 0.548 | 0.16 | FMN | complex8.pdb.gz | 547,575,730,731 |
| 9 | 0.01 | 1c30A | 0.328 | 8.84 | 0.045 | 0.518 | 0.23 | ORN | complex9.pdb.gz | 549,634,635,637 |
| 10 | 0.01 | 1ce8A | 0.327 | 8.95 | 0.046 | 0.521 | 0.19 | IMP | complex10.pdb.gz | 548,549,658,661,662 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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