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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.01 | 1hnz8 | 0.072 | 4.51 | 0.056 | 0.092 | 0.45 | III | complex1.pdb.gz | 106,108,143,149,155 |
| 2 | 0.01 | 2ja58 | 0.106 | 3.27 | 0.070 | 0.122 | 0.40 | III | complex2.pdb.gz | 100,103,104,107 |
| 3 | 0.01 | 2yu93 | 0.103 | 3.56 | 0.036 | 0.122 | 0.47 | III | complex3.pdb.gz | 111,112,158,159,172,176,177,179,180,181,184 |
| 4 | 0.01 | 1hnz4 | 0.072 | 4.51 | 0.056 | 0.092 | 0.58 | III | complex4.pdb.gz | 103,104,144,170,171,173,174 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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