Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCCCCCCSSCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCCCCSCCCCHHHCHHHHHHCCCHHHHHHHCCCCCCCCCCC QAPKASSRASVGAAGPEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPTEGACTADKPTLVCSSAVGSWSYSQQRRQRVCSGEGPPKMDLMAFSPSLSPCPIMMGKAENQDLNEDHDAKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ |
1 | 5e9tB | 0.07 | 0.05 | 1.95 | 0.49 | CEthreader | | ----------------------------------------------------------------------------------IQLFDYYNQETQDLHDSLLAAGYACPTIVIEANGFLPDDISPYTYFLGDEEGVDHPLFFNQVPVPPFWEITGDHQVARVSDGEERARIHYASQARGRLVKQVDWLDKKGQLRLSER-----YNKQGRCFAKTAYKSGQEAFNTTYYSTDGQERIVENHVTGDIILTLDQEPLRIFKSRVDFIRFFLERLDLDLDH |
2 | 3ixzA | 0.08 | 0.08 | 3.03 | 0.58 | EigenThreader | | GYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASRALCRVLTLCNRAAFKSGQDAVPVRFPKVCEIPFNSTNKFQLSIHTLEDPRDPRERCQLYLSEKDYP----PGYAFDVEAMNFPTSGGIRVIMVTGDVGIISEGSETVEDIAARLRVPVDQVNRKDARACVDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIP |
3 | 3kdpB | 0.10 | 0.09 | 3.32 | 0.38 | FFAS-3D | | ------SEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVML----------LTISEFKPTYQDRVAPPGLTQIPQ-----------SQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVPSELKERGEYNNERGERKVCRSRLEWLGNCSGLNDETYGYKDGKPCVIIKLNRVGFKPKPPKNLETYPVMKYNPYVLPV-----HCTGKRDEDKEKVGTMEYFGYGKLLQPKQFTNLTMDTEIRIKAYGENIGYSEKDR |
4 | 3j2k71 | 0.07 | 0.06 | 2.62 | 0.96 | SPARKS-K | | ---PKPKSVVAPPGAPKKEHVNVV---FIGHVDAS--TIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVG------FNPKKDIH---FMPCSGLTGALKEQSDFCPWYIGLPF--------------------IPYLDNLPNFNRSVDG |
5 | 5csaA | 0.09 | 0.02 | 0.84 | 0.36 | CNFpred | | ---------------------DPTLAVICGAATKAFLASEEARHKYIESLQKG---QVLSKDLLQTMFPVDFIH---GKRYKFTVAKSG---NDRYTLFI--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
6 | 6lknA | 0.05 | 0.03 | 1.40 | 0.67 | DEthreader | | ---STPYNDKEETLKVLKMFTDFLSFMVLFNFIIPVSMYVTVEMQKFLGSFFISWDKDF------------------------------------------------------------------------ETIEALHGLKVWVL-T-GDKM---E---TAKSTCCMAPQKAQIVMVKNSPITLSIIGFLKKLLLAHGHL---RIAYSLEQHINTLSDPRLYMKI-----------S--GN-----AMLQGPFLYWTFLAAFEGTFFGVVLFTTLKA |
7 | 5xjcW | 0.06 | 0.06 | 2.63 | 0.97 | MapAlign | | -----APRNMLSGYAEPAHINDFMFEQQRRTFATKELDEITAKRQKKGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNMSYVISGDGNGKLNIWDWKTTKLYKVCIGAVWHPHETSKVITCGWDGLIKLW--- |
8 | 2blmA | 0.12 | 0.10 | 3.60 | 0.62 | MUSTER | | DDFAKLEEQFDAKTGTNRTVAY-ERF---AFASTI-----ALTVGVLLQKSIEDLNQRITYTRDDLVNYNPITEKHVDTGMTLKELADASLRYSDNAAQNLILKQIGGPESLKKELRKIGDEVTNPERFEPELNEVNPGETQDTSTARVTSLRAFALEDKLPSEKRELLIDWMKRNTTGDALIRAGVPDGWEVAAASYGTRNDIAIIWPPKGDPVVL----AVLSSRDKK-DAKYDDKLIAEATKVKALNMNGK----------------------- |
9 | 2pffB | 0.13 | 0.13 | 4.35 | 1.07 | HHsearch | | SQLQEQFNKIL--PEPTEGFAYLEGNDIHALAAKLLQKTKLIKNYITARIMAKRPDKKSNALFRNTDDYFEEL-RDLYQTYHVLVGFSATPDKDYLLSIPISCPLIPGELRSYTGHSQGLVTAVAIAE-TDSWEFFVSVRKAITVGVRLEDSLENNEGSPMLSSNLTQEQVQSHLPAGKQVEISLVNGAKSPFHSHLLVPNAK-DIQIPVYD-----TFDGSDLRVLSGSISERIV-DCIIRLPVKWETTTQ------FKATHILDFGPDINPDDDY |
10 | 1kb0A | 0.09 | 0.09 | 3.53 | 0.49 | CEthreader | | IDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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