Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCSSSSHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHCCSSSSSSSCC QGVGYQMLGNVVTIGLAFFPFLHRLFREKSLDQLKSISAEEILTLFCGAPPVTPIIVLSIINFFERLCLTWMFFFMMCVAERTYKQRFLFAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQVLQGHKTFLNDAYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQINLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVILSAVSGVISDLLGFNIRLWKIKS |
1 | 3k07A2 | 0.11 | 0.11 | 3.96 | 0.41 | CEthreader | | LGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLSFIPIFTL--EGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWPLNRFLIRVYHPLLLKVLHPGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGEFGVVMLMYLRHAIEAVPSLNEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPISEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWL |
2 | 1fftA | 0.07 | 0.07 | 2.82 | 0.67 | EigenThreader | | DHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEA---------GFLPPHHYDQIFTAHGVIMIFFFVIGLMNLVVPLQIGFLNNLSFWFTVVGVILVNVSLGVGESLQLSGIGTTLTGINFFVTILKMRPVFTWASLCANVLIIASTVALLTLDRYLGTHFFTYINLIWAWGHPEVYILPVFGVFSEIAATFSRYTSLVWATVCITVLWLHHFFTMGAGANVNAFFGITTMIIGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFSVGGMTGVLLAHFHNVIIGGV |
3 | 3aqpA2 | 0.13 | 0.11 | 3.84 | 0.83 | FFAS-3D | | ----VLTLGAAVDGNVLSFERIKEELRA-------GKKLRQAIPEGFRHS-TLTIMDVNIAHLLAAAALGFAVILAIGVVASVFSNLVFSRHLLERL--ADRGEIRPPPRFNFMGPARYVTAATLRRFLEEKGFPPAIGEELRRNAVMAVLVGLGLILLYVAFRFDWTFGVASILAVAHDVAIVAGMYSLTIVGYSIN-----DSIVVSDRIRENQKLLRHLPYAELVNTVMTSLTTLLPILALL--------FLGGSVLRDFALAIFVGIFVGTYSSIY----------- |
4 | 6w2wA | 0.11 | 0.08 | 2.76 | 0.74 | SPARKS-K | | -------------------------------SEEVNERVKQLAEKAKEATD--KEEVIEIVKELAELAKQVVAEIVYQLAEVAEHSPELIKEILQEALRLAEEQGDE------ELAEAARLALKAARLLEEARPENEAAKECLKAVRAALEAALLALLLLAKHPGSAAQDAVQLATAALRAVEAACQLAKQYPNSDIAKKCIKAASEAAEEASKAAEEAQRPDSQKARDEIKEASQKAEEVKERCERA------------------------------------------- |
5 | 3rkoB | 0.11 | 0.10 | 3.59 | 1.01 | CNFpred | | ---GLSLTMLSVVTGVGFLIHMYASWYMRGE-----EGYSRF-----------FAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMK----AFVVTRVGDVFLAFALFILYNELGTLNFREMV-LMWATLMLLGGAVGKSAQLPLQTWL-VSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGV----AWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNIFKMGG |
6 | 6c70A | 0.09 | 0.07 | 2.75 | 1.00 | DEthreader | | LAKRLLFCVAGATIFSVISWTGITFIEDSP--------------A--GAGHVFALIYQFYYLVISMAVSNSLDVLFCSWLLFACEQLQHLKAIMKPLMELS--------KQEMLVRSAIKYWVERHKHVVR-LVTAVGDAYGVALLLHMLTTTITLTLLAYQA-KV-VYAATVIGYLLYTLGQVFLFCIFGNRLIEESSSVMEA-AY-SCHWYD-G--------------SEEAKTFVQIVCQQCQ-K-AMSIS--FTVSLDLFASVLGAVVTYFMVL-V-QLK------- |
7 | 3jacA | 0.04 | 0.04 | 2.20 | 0.89 | MapAlign | | GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGHSAATDIASSLSDDQVPQAFLFMLLVQFGTMVIDRALYLRKTVLGKLAFQVVLVVAI-HIWMFFILPAVTERMFSQNAVAQLWYFCIYFALS |
8 | 5cwmA | 0.13 | 0.10 | 3.56 | 0.52 | MUSTER | | ---DPEDELKRVEKLVKEAEELLRQAKEKGSEED----LEKALRTAE----EAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESGSEEALERALRV--------AEEAARLAKRVLELAEKQG---DPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGSEEAKERAERVREEARELQERVKELRER------------------------------------------- |
9 | 2pffB | 0.15 | 0.13 | 4.53 | 0.71 | HHsearch | | GSLEHVLLVPTASFFIA-----SQLQEQFNKILPEPTTPAELVGKFLGYCNDIHAKLLQENDTTKTKELIKNYITARIMAKRPFDKKSNSALFFTDDYFEELRDLYQTYHVLVGDL--IKSAETLSELIRTTNPTPDKDYLLSIPLIGVIQLAHYVVTAKLLSATGHSAETDSWESFFVSVRKAITVLFFIG--VRCYEAYPNTSLPPSLEDSLENNEGVPTQVQDYVNKTNSHLPAG--------KQVEISLVN--G-----AKNLVV---SGPPQSLYGLNLTLRKAKA |
10 | 4mt1A2 | 0.05 | 0.05 | 2.37 | 0.41 | CEthreader | | SIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVI-------GITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCATGFFGWFNKKFDSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEGSQTLILYGLAVAAVFLVLAALYEWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIY |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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