Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420
| | | | | | | | | | | | | | | | | | | | | |
| SS Seq | CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCSSSSSSSSSSSSCCCCCCCCSSSCCCCCCCCCCCCCCSSCCCCCCCCCCSSSSSSCCCCCCCCCCCCCCCCCCCCCCCCSSSSSSCCCCCHHHHHHHHHHHCCCSSSSSCCCCCCCCCCCCCCCCCCCCSSSSSCCCHHHHHHHHHCCCCSSSSSSSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCSSSSSCCCCCCCCCCCSSSSSHHHCCCCCSSSSCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCSSSCCCCCCCCCCCCCCCCCCCCCC MAMSLIQACCSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYAEPAPDPGAGAAGGGGAELHTEKTECGRYGEHSPKQDARGEVVMASSAHDRLACDPNTKFAAPTRGKNWIALIPKGNCTYRDKIRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSLLERNITVTMYITIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADCMDDLPTDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQVVQDTDPIPQEGDVIFTTNSEQEPAVSSDSDISLIMAMEVGLSDVELSTDQDCEEVKS |
1 | 3eifA | 0.10 | 0.08 | 3.13 | 1.18 | EigenThreader | | IVNGLADYARNYAQAIRDAVNLAFDYAKSKGVSIVTSAKQLTETATVKTDDH--------------QAKMPVLSTN----RFEPNKAYDYAYANRGMKEDDFKDVK--------GKIA-LIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPI---ELPNVDQMPAAFISRKDGLLLKD----NSKKTITFNPGQDILSSNNGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATASKDLLAQMKNGRFKQD------------------PKKEELGFRGDFGNLSEKPIYDS-----KDGSSYYHEAN---SDAKDQLDGDGLQFYALKGVENIEDIESSEITQDDDSHYYIHRHANGKPYAAISPNGDGNRDYVGNVVWTSEVKNYNNDLASTLGS-----TRFEKTRWDGKDKDGKVVVNG |
2 | 3icuA | 0.38 | 0.14 | 4.20 | 1.41 | CEthreader | | ------------------------------GAMDGAEAVWTAYLNVSWRVPHT---------GVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVQVSWLALIQRGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWVN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
3 | 7cpxA | 0.05 | 0.03 | 1.57 | 0.67 | DEthreader | | --------KERFD--L-DDLGAFDAAFFNSAKSLVLFRRAIVHSYVIVLDSLQSLPEKYRP--TLLDMAVQ--LV-L---L-EAARIRFTAVVGHASNSPS-WYSSERQMAAR----GIEVLKSPCVATIK-VL--------YTGCLERGKDSRAAYLWERFGASSFDA---------------------RAVAPCMSVSKLLPAYP-WD-RS--RY------T--HLRGPKPHLLLGVIVMLLHPASLDVAFQTVIGAYSS--------------------------------AFNTIN---TYDKGDYLSGD----IVVF--TTLFQVE-NITFKP-----TARDSSSYFLESATRNASI-VHVRPDYID-FTDTVS-DAETLFDFVASTIDIGA------RF-DSVEEELTGIPPLLKDRITFFD---DP--RIG |
4 | 3icuA | 0.38 | 0.14 | 4.12 | 1.33 | FFAS-3D | | -------------------------------AMDGAEAVWTAYLNVSWRVPHTGV---------NRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVQVSWLALIQRGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKH----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
5 | 3eifA | 0.12 | 0.11 | 4.03 | 1.58 | MapAlign | | MRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYAVTSAGDSSFGGKTRLPDHPDYGVVGATVEMPVLSTNRF-EPNKAYDYAYA-----NRGMKEDD-FKDV---KGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDK-GFPIEL-PN-VDQMPAAFISRKDGLLLK----DNSKKTITFNTADGNIKPDIAAPGGTSMSAPLVAGIMGLLQKQYETQSERLDLAKKVLMSSAAGAVDAKKASAQATVQTDKVSKQVTVPIDASRFSKDLLAQMYFLEGFVRFKIPYIGFREKPIYDSKDGSSYYHEANSDAKDQLDGDGLQFYALKNNFTALTTESNPWTIIKAVKEGVENIEDIESSEITETIFAGTFAKQDDDSHYYIHRHANGKPYAAISPNGDGNRDYVQFQGTFLRNAKNLVAE----- |
6 | 3icuA | 0.37 | 0.14 | 4.14 | 1.29 | SPARKS-K | | ------------------------------GAMDGAEAVWTAYLNVSWRVPHTGVN---------RTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVQVSWLALIQRGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWVN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
7 | 3icuA | 0.38 | 0.14 | 4.12 | 1.28 | CNFpred | | ------------------------------------EAVWTAYLNVSWRVPHTG---------VNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVQVSWLALIQRGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWVN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
8 | 3icuA | 0.38 | 0.14 | 4.26 | 0.78 | MUSTER | | ------------------------------GAMDGAEAVWTAYLNVSWRVPHT---------GVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSWLALIQRGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGP-WVN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 3icuA | 0.38 | 0.14 | 4.20 | 2.16 | HHsearch | | ------------------------------GAMDGAEAVWTAYLNVSWRVPHT---------GVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVQVSWLALIQRGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWV-N----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 4tjvA | 0.18 | 0.06 | 2.08 | 0.98 | CEthreader | | -----------------------------------GSRFVVEKNNLKVTSPDS------------IKGIYECAIGNFGVPQYGGTLVGTVVYP--KSNQKACKSYISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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