Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC EQKEGRRASHTLLPSHRLKQSADSSSSRSSSSSSSSSRSRSRSPDSSGSRSHSPLRSKQRDVAQARTHANPRGRPKMGSRSTSESRSRSRSRSRSASSNSRKSLSPGVSRDSSTSYTETKDPSSGQEVATPPVPQLQVCEPKERTSTSSSSVQARRLSQPESAEKHVTQRLQPERGSPKKCEAEEAEPPAATQPQTSETQTSHLPESERIHHTVEEKEEVTMDTSENRPENDVPEPPMPIADQVSNDDRPEGS |
1 | 4nl6A | 0.09 | 0.09 | 3.30 | 1.63 | SPARKS-K | | PEQEDS----VLFRRGTGQSDDSDIWDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSSEDGCIYPATIASIDFKRETCVVVY-TGYGNREEQNLSDLLSPICEVANNIEQNAQENENES----QVSTDESENSRSPGNKSDNIKPKSAPW-NSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSG-PPIIPPPPPICPDSLDDADALGSMLIS |
2 | 1vt4I3 | 0.12 | 0.06 | 2.11 | 1.19 | HHsearch | | ------------------------------------------------------------------------------------------------EYALHRSI------VDHYNIPKTFDSDIPPYLDQYFYSHI-----------------GHHLKNIEHPERMTLFRMDFRFLEQKIRHDS-----TAWNASGSILNTQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDIALMAEDAIFE |
3 | 6fb3A | 0.07 | 0.07 | 2.81 | 0.51 | CEthreader | | RRDASGMPRHLLMPDNQIVTLGTNGGLKLVSTQTLELGLMTYNGNSGLLATKSDETGWTTFYDYDHEGRLTNVTRPTGVVTSLHREMEKSITIDIENSNRDDDVTVITNLSSVEASYTVVQDQVRNSYQLCNNGTLRVMYANGMSISFHSEPHVLAGTVTPTIGRCNISLPMENGLNSIEWRLRKEQIKGKVTVFGRKLRVHGRNLLSIDYDRNIRTEKIYDDHRKFTLRIIYDQLGRPFLWLPSSGLAAVNV |
4 | 6lthN | 0.09 | 0.09 | 3.35 | 0.57 | EigenThreader | | PSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLVCAIMRVHAFLEQWGLINYQVDTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHF |
5 | 2xd8A3 | 0.08 | 0.07 | 2.79 | 0.39 | FFAS-3D | | -----ATDKYALY--LKLFSGEMFKGFQHETIARDLVTKRTLKNGKSLQFIYTGRMTSSFHTPGTPILGNADKAPPVAEKTVMDDLLISSASATNFVEPGGTQIRVGSGTNESDAFTASA------------------------LVNAFYDAAAAMDEKGPFLGKYGVKYGGTTGETSPGNLGSHIGPTPENANATGGVNNDYGTNAQKEAAGVVEAIGPQVQVTNGDVSVI-YQGDVILGRMAMGADNPAAA |
6 | 6em5m | 0.12 | 0.12 | 4.20 | 1.45 | SPARKS-K | | DKNSGSSLNLTLISKIQRNEQTDDSINPYEPLIDWFTRHEEVMPLTAVPEPVPSKNEAKRVMKIVRAIREGRIIPPKKLKEMKEKEKIENYQYDLDSTETNDHVMHLRAPKLPPTNEESYNPPEEYLLSPEEKEAWENTEYSERERNFIPQKYSALRKVPESIRERFERSLDLYLAPRVRKNKLNIDPNSLIPELPSPKDLRPFPIRCSTIHKGDDGTVRVWEILTGREVYRTTLIDDEENPDYHNPDANNGI |
7 | 6h3iA | 0.05 | 0.03 | 1.36 | 0.67 | DEthreader | | ----PLNSTRGAQTKSVVQNFDLYDYDNDRANDSTIDMRW----------NTTRLDL-TYY-PGERGSFGASNPSNGMMTVRFALDLV-RGE-WR--FKNVSVDMRQLFGNDQNFNPNNDIKLDQLIKDNVEGIGLDP--S---------------------------PSTNEY--KPLSPYSNFIMSNVNVAVKGMEYIIDFSL------------------------------------------------ |
8 | 5wq7A | 0.06 | 0.06 | 2.70 | 0.84 | MapAlign | | QSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGIFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASF--NVGQDVPVLSTVERKTVGTKLKQVNEGDAVLLEIEQEVSSVDGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRID |
9 | 4nl6A | 0.11 | 0.11 | 3.82 | 0.93 | MUSTER | | ---------------MAMSSGGSGGGVPEQEDSVLFRRGTGQSDDSDIWKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIIPPPPPICPDSLDDADALG |
10 | 2pffB | 0.18 | 0.15 | 5.01 | 0.60 | HHsearch | | YLKGATGHSESFFVSVRKVRCYEAYPNTSLPSIEDSLENNEGVPSPMLSISNL-TQEQVQDYVQVEISLNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL--KFS---------------NRFLPVASP---------F----HSHLLVPASDLINKDLVKNNVS---FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDPVKFKATHILDFGRNKDGT-----GVRVIVAGTLDINPDDD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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