Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC MTEPGASPEDPWVKASPVGAHAGEGRAGRARARRGAGRRGASLLSPKSPTLSVPRGCREDSSHPACAKVEYAYSDNSLDPGLFVESTRKGSVVSRANSIGSTSASSVPNTDDEDSDYHQEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLREIVIGVLHQLKNQLY |
1 | 3icqT | 0.07 | 0.07 | 2.99 | 0.56 | CEthreader | | FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSD-FNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAREEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG |
2 | 5tsjN | 0.06 | 0.06 | 2.72 | 0.58 | EigenThreader | | AEGLTRQKQELEEELALAQAYLEPLERLAALAHGLDKSPFTEKELPLVEEALRKALEDRYALSRAGVAELRLPGALGELPLSEAARRLKERAEAAPRELSEVRQHLAKLARESASTLQSLWTRAQDEVARLKALEELASPIFFPFWFGMVGRWLSGYVKPLVIDLFALKLKPPVLAKLVYILNWMVFWTVVWGLIYGEFFGTWEGVGYLGGLLGILALAASYLGNLQAGWLSASHIRIYAVGAAGGILAGLLTDVGFAMAEVLLGIVVAGVLHLLILLLTTLGHMLQPIRLVEFFTKF |
3 | 1nkpA | 0.28 | 0.08 | 2.46 | 0.88 | FFAS-3D | | ----------------------------------------------------------------------------------------------------------------------------GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNE------KAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG---------------------------------------------------------------------------------- |
4 | 6w2rA | 0.10 | 0.07 | 2.46 | 0.71 | SPARKS-K | | -------------------------------------------------------------------------------------------------GTTEDERRELEKVARKAIEAAREGNTDEVREQLQRALEIARESTKTAVKLALDVALRVAQEAAKRGNKRIAEESNNSDALEQALRVLEEIAKAVLKSEEDAKKAVKLVQEAYKAAQRAIEAAKRTGTP-------DVIKLAIKLAKLAARAALEVIKRPKSNEALKKIVKAIQEAVESLREREKARERVREAVERAEEV-- |
5 | 5j1iA | 0.11 | 0.05 | 1.95 | 0.62 | CNFpred | | -----------------------------------------------------------------------------------------------------------------------------------RSLSAIYLEKLKTISLVIRGTQGAEEVLHEEQLKEAQAVPATLPELEATKASLKKLRAQAEAQQPTFDALRDELRGAQEVGERLQQRHGERD-------------VEVERWRERVAQLLERWQ------AVLAQTDVRQRELEQLGRLRYYRESADPLGAWLQDARR |
6 | 5u1sA | 0.03 | 0.03 | 1.51 | 0.83 | DEthreader | | ------EDITTDHSLNSIYSLL---KSHH-------MWGHIN-T----NETNWNDYYLSNLKILALQIILVFFSVTTS-K------------------KN--EMGPNKIERSTIFLVLSECRLSNIENVTSHRTILKFDFQNSSFEMDFVKMLLCYNFNNFDKLS-------LSQGSRLALLKSLSFSFFQLIKIHIRISNPRHMPLLERVSAAQKDLMENLNI-LEPRRKRRTHLFFHTFLVVSSSCHLFAMKYYPTGTIYTYLLGCMVLGNLWVVSRRYLGAA------------- |
7 | 4fgvA | 0.06 | 0.06 | 2.54 | 0.79 | MapAlign | | VENDEGEIVREFVKDTDSVQLYKTIRECLVYLTHLDVVDMEQIMTEKLARQVDGSEWSWHNCNVLCWAIGSISMAMNEETEKRFLVTVIKDLLGLTEMKRGKDNKAVVASNIMYIVGQYPRFLKHWKFLKTVVNKLFEFVQDMACDTFIKIAKQCRRHFVALQPSENEPFITFYEACGYMVSASACSSIGPYFFPQIGRLYNDMLQMYAATSQLISEAVARDGEIATKMPKVYPEHRVEFFNLLRAINVIDSCMWASKHDNRDVETAGLNMCLELDTDHKAGFKTQSMLLMRLFYFV- |
8 | 6ek4A | 0.08 | 0.08 | 3.16 | 0.59 | MUSTER | | RLSHQQKSGIEIIQEKTLRISLYSRDLDEAARASVPQLQTVLRQLPPQDYFLTLTEIDTELEDPELDDETRNTLLEARSEHIRNLKKDVKGVIRSLRKEANLMASRIADVSNVVILERLESSEEQERKAEIQADIAQQEKNKAKLVVDRNKIIESQDVIRQYNLAFKDYIPNKELIKQAIKQGVEIAKKILGNISKKYIELADARAKLDERINQINKDCDDLKIQLKGVEQRIAGIEDVHQIDKERTTLLLQAAK---EQAWNIFAKQLQNTIDGKIDQQDLTKIIHKQLDFLDDLAL |
9 | 1nkpA | 0.27 | 0.08 | 2.47 | 1.88 | HHsearch | | ----------------------------------------------------------------------------------------------------------------------------GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELEN------NEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC-------------------------------------------------------------------------------- |
10 | 6s7iA | 0.07 | 0.07 | 2.76 | 0.51 | CEthreader | | ------------AMELIRIAMKKDLENDNSLMNKWATVAGLKNPNPLYDFLNHDGKTFNEFSSIVNIVKSQYPDREYELMKDYCLNLDVKTKAARSALEYADANMFFEIEDALIDSMISCSNMKSKEYGKVYKIHRELSKGEIDVFEASANIGKQRIKTAEMNIFS---KMLLMYDCLNKGNFAPMMLLFQQIDLSEIK--ENRYLKNSFETRINVLLSNIYLNENNLELCREYAQKAISSTDTQRFLVFSYLTIGTSYSDFNLSKQNYLIGLKFAKGNPGFEEFFKRNLSFLNNFWN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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