Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Downloadalignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHCCCCCCSSSSSCCCCCHHHHHHHHHCCCCCSSSSSSCHHHHHHHHHHHHHHHHHHHCCCCCSSSSSCCHHHHHHHHCCCCCSSSSSSSCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCSSSSSSCCHHHHHHHHHHHHHCCCCSCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCSSSSSSSSCCCCCCCCCCCCCCCCCC MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQAVTSQTSLPGH |
1 | 2vdvE | 0.59 | 0.43 | 12.47 | 1.17 | DEthreader | | ---------------------------------------SPQDMDWSKLYPYYKN-Q-------------M--TK-KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTSHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDP-----H-KARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRLPTPAIL----------- |
2 | 3ckkA | 0.98 | 0.70 | 19.49 | 1.71 | SPARKS-K | | ------------------------------------YPVKPEEMDWSELYPE----------------------FAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDIIS-----------PTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQ----------- |
3 | 3ckkA | 0.99 | 0.70 | 19.48 | 0.63 | MapAlign | | ------------------------------------YPVKPEEMDWSELYPEF----------------------AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFP-----------DIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDP-------------- |
4 | 3ckkA | 1.00 | 0.71 | 19.88 | 0.62 | CEthreader | | ------------------------------------YPVKPEEMDWSELYPEF----------------------AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD-----------IISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQ----------- |
5 | 2vdvE | 0.60 | 0.47 | 13.40 | 1.72 | MUSTER | | ---------------------------NPFSDHQLEYPVSPQDMDWSKLYPYYKNQM-----------------TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPH------KARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRLPTPAIL----------- |
6 | 3dxxA | 0.18 | 0.14 | 4.46 | 1.19 | HHsearch | | ----------------------EHALENYWPVMGVEFS--EDMLDFPALFGR-----------------------EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAH------EEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSEDYVPRPA----SRPVTKFEQRGHRLGHGVWDLMFERVKLEH------------- |
7 | 3dxxA | 0.19 | 0.14 | 4.46 | 2.22 | FFAS-3D | | ---------------------------------------------LENYWPVM-----GVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHE------EGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESN--DYVPRPASRPVTKFEQRGHRLGHGVWDLMFERVK-------------LEH |
8 | 2vdvE | 0.53 | 0.41 | 11.93 | 0.60 | EigenThreader | | ------------------------NPFSDHQLEYPVSPQDM-------------DWSKLYPYYKNQMTK-------KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTSKGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHKA------RIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRLPTP----AIL------- |
9 | 3ckkA | 1.00 | 0.71 | 19.88 | 2.17 | CNFpred | | ------------------------------------YPVKPEEMDWSELYPEF----------------------AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD-----------IISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPVLQ----------- |
10 | 3ckkA | 0.99 | 0.70 | 19.48 | 1.00 | DEthreader | | ------------------------------------YPVKPEEMDWSELYPEF---------------------A-QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPD-----------IISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDP-------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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