Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Download alignment | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 600 620 640 660 680 700 720 740 760 780 800 820
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| SS Seq | CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHCHCCCHHHHHHCCCCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHC MAAMAPGGSGSGGGVNPFLSDSDEDDDEVAATEERRAVLRLGAGSGLDPGSAGSLSPQDPVALGSSARPGLPGEASAAAVALGGTGETPARLSIDAIAAQLLRDQYLLTALELHTELLESGRELPRLRDYFSNPGNFERQSGTPPGMGAPGVPGAAGVGGAGGREPSTASGGGQLNRAGSISTLDSLDFARYSDDGNRETDEKVAVLEFELRKAKETIQALRANLTKAAEHEVPLQERKNYKSSPEIQEPIKPLEKRALNFLVNEFLLKNNYKLTSITFSDENDDQDFELWDDVGLNIPKPPDLLQLYRDFGNHQVTGKDLVDVASGVEEDELEALTPIISNLPPTLETPQPAENSMLVQKLEDKISLLNSEKWSLMEQIRRLKSEMDFLKNEHFAIPAVCDSVQPPLDQLPHKDSEDSGQHPDVNSSDKGKNTDIHLSISDEADSTIPKENSPNSFPRREREGMPPSSLSSKKTVHFDKPNRKLSPAFHQALLSFCRMSADSRLGYEVSRIADSEKSVMLMLGRCLPHIVPNVLLAKREELIPLILCTACLHPEPKERDQLLHILFNLIKRPDDEQRQMILTGCVAFARHVGPTRVEAELLPQCWEQINHKYPERRLLVAESCGALAPYLPKEIRSSLVLSMLQQMLMEDKADLVREAVIKSLGIIMGYIDDPDKYHQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLILTLLNKIEKLLREGEHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVPQIEVTRFPRPMSPLQDVSTIIGSREQLAVLLQLYDYQLEQ |
1 | 7abiu | 0.13 | 0.12 | 4.09 | 1.44 | FFAS-3D | | MSAETPRTDRGGDERNRPLSDEELDAGYVPIRTPARKLTATPTPLGGMTGFHMQTEMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESEEQKERKIMKLLIKNGMRKAALRQITDKAREFGAFNQILPLLMS------------------------------------PTLEDQERHLLVKVIDRI-LYKLDDLVRPYVHKILVVIEPLLYYARVEGREIISNLAKAAGLATMIS------TMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQRSLVEIIEHGLVDEQQKVRTISALAIATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPYANYYTREVMLILIREFQSLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRVRQDLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLEKAHKKAIRRATVNTFGYIAKAIGPHDVLFTVLPALMNEYRVPELNVQNGV----LKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSEDSLNHLLNYVWPN--------VFETSPHVIQAVLQYCLQGLFH-----PARKVRDVYWKIYNSIYIG |
2 | 3nowA | 0.09 | 0.07 | 2.67 | 1.19 | SPARKS-K | | ------------------------------------------------NAKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKE--------QTGAELLYKDHCIVNMVHLVAALCENSLGVPWFMRVLDQ--------------KHEN------------------------CVSTAQFCLQTILNALSGLKNKPDSKPD----KELCTRNNREIDTLLTCLVYSITDR-----------------TISGAARDGVIELITRNV--------------HYTALEW------AERLVEIRGLCRLLDVCSELEDYSAMDITGSSSTYDEAKARFTDQIDEYIKDLLAPDMESKVRVTVAITALLNGPLDVGNQVVAILQMILAMATTASSKKDKAKALCEQRLYHSKNGSYGGQDAAIRPFGIKPGKDKDDAECKEKLIEDKASDLARGGNCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG----------------------ITTALCALAKTESHNSQELIARVLNAVCG---LKELRGKVVQALLRMALEGTEKGKRHATQALARIGITINSGQRSLDVIRPLLNLLQQDTALENFESLMALTNLASM-NESVRQRIIKSKIEYYLME-DHLYLTRAAAQCLCNLVMSEDVIKMFEGRVKFLALLCEDEDEETATACAGALAIITSVS----VKCCEKILAIWLDILHTLIA----NPSPAVQHRGIVIILNMIEEIAKKLFETDLLSGLGQLPDD------------------------TRAKAREVATQCLAAAER |
3 | 5vchA | 0.11 | 0.07 | 2.54 | 1.42 | CNFpred | | ----------------------------------------------------------------------------------------------PALIHILQNSIKQLAGVEARKQVS--TSVKQSLLNSAFNE---------------------------------------------------------------GKDAVRHANARVIASIGSE-WPELIPNLLQAACDS--------------------NPKIRETAIFIILSLLESFNANLALH----------------------IDDFLNLFAQTINDS-ASLETRSLSAQALSYVSSLIEEEG------------EINPQYAAKFASLIPSVVQVLDATIRDTTNTKLIFNCLNDFLLLDSQLTGNTIADLVKLALQI-----------------------------------------------------------------VNSDVDEDIRVFAVQFVTSAL-VYRKSKINQA-----KLGPEITLAALKVASEEI-TPALTALRLISNASGELSPSQVGVPIIEHLPTMLSSSNPFERRSILLAISVLVTGSPDYTQFDKIIPATVTGLKDSEAVVQLAALKCIVQLSTNLQDEVAHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFIAHNDYLDPLMNKLFQMLEQQSPKLRAAIVSAIGSCAFAAGSGFVPYFKTSVQYLQQFIQNVS--QIEGLSEDDIELKALTFENISTMGRAVKSAAFAE-----------------YAEPLVNAAYEAIKTDSARLRESGYAFIANMAKV |
4 | 3nowA | 0.10 | 0.08 | 3.15 | 1.31 | MUSTER | | -------NAKTSTKVK-LTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAK---SLTKVEKDQDIYVNMVHLENSVERTKGVLTELGVPWFMRVLDHENCVSTAQFCLQTILN---ALSG--------------LKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIR--------GLCRLLDVCSELEDYKYESAMDITGSSSTIYENMYYDEAKARFTDQIDEYIKDK-------------LAPDMESKVRVTVAI---TALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQGVDILKRLYHSNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWLDAECKEKLIEDKASIHADLARGGNQSCLYNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALKTESHNSQELIARVLNAVCGL------KELRGKVVQE------------GVKALLRMALEGTEKGKRHATQALARIGITINPEQRSLDVIRPLLNLLQQDTALENFESLMALTNLAESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI--ASWLDILHTLIANPSPAVQHRGIVIILNMINA--EEIAKKLFETDIMELLSGLGQLPDD--------------------TRAKAREVATQCLAAAERY |
5 | 1b3uA3 | 0.16 | 0.04 | 1.26 | 1.06 | HHsearch | | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIRQLSQSLLPAIVELA---------------EDAKWRVRLAIIEYMPLLA-------------------GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA-GDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA--------------------------------------------------------------------------------------------------------------- |
6 | 6wg3E | 0.11 | 0.09 | 3.24 | 1.43 | FFAS-3D | | -------------------SKLSERLWRDLIMERVTKSADACLTTITSPNMPKAVYIEDPQYDPVYRQRVIVMLYNKVCDIVSQLLTDTTILQVSSMGITPFFSELQLCAIKLVTAVFSRYEKHRQLEEIFTS----------------------------LARLPTSKRSLRNFRLPMYIQMVTALVLQLIQCVVHLPDVVITNSYETAMRTAQNFLSIFLKKCGSKQGEED---------------------YRPLFENFVQDLLS----------------TVNKPEWPAAELLL---SLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDEIQQLQKALLDYLDENTETRDTTLETEKKEIETTGQIMHRAENRKKFLRSDTVDYDDACLIVRYLASMRPFAQ----------------------------------------------SFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARLDMQRGTSVREAAVELLGRFVPQLAEQYYISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNILNITDVVAACRDTGYDTQLVDNLVEHIYEENSGRLVACITTLFLFSKIRPQLMHAMTMQPYLTTKCSTQNDFMVICNVAKILELVVPLMEHPSELATIEEDLMKLIIKYGMTVVQHC----VSCLGAVVNKVTQFVWACFNRYYGAISKLKSQHQEDPNNTSLLTNKPALLRSL-FTVGALCRHFDFDLEDFKGNSKVNIKDKVFTKHSDEIIGLGFAFIQHPSLQEVKNLYNNILSD |
7 | 5gm6G | 0.10 | 0.08 | 2.92 | 1.18 | SPARKS-K | | ---------------SHQLGGQYSIPQDLRENLQKEAARIGENEKDETRTVQNREDSYHKRRFDMKFELNKDEKKERTLSMLLLKVTFGPEMIFNRLLPILLDRSLEDQERHLMIKTIDRHKILVVAAPLLID----------------------------EDPMVRSTGQEIITNLSTVAGLKTILTVMRPDIENEDEYVRNVTSRAAAVVAKALGVNQLLPFINAACHSRKSW------------------KARHTGIKIVQQIGILLGIGVL-----------------------NHLTGLMSCIKDCLMDDHVPRIVTAHTLSTYPYGIEVFNVVLEKGIRSHRGKVLSSFLKAVGSMIPLMEYAGYYTTEAMRIIRREDEMKKTILLVLQKCS--------AVESITPKFLREEIAPEFFQKFWVRRVALD----------------------------------------------RPLNKVVTYTTVTLAKKLGCSYTIDKLLTPLRDAEPFRTMAVHAVTRTVGTLDERLETRLIDALLIAFQEQTNKPFLAPIVSTILNHLKHKTPLVRQHAADLCAILIPVIKNFEMLNKLNIILYESLGEVYPEVLGSIINAMYCITSVMLDKLQPP-INQILPTLTPINKHRKVEVNTIKFVGLIGKLAPPPKEWMRICFELLELLKSTNK----EIRRSANATFGFIAEAIG--PHDVLVALLNNL-----KVQERQLRVCTAVAIGIVAKVCTNVQNGVLKAMSFMFEYIGNMSKDYIYEDALTDRDLVHRQTNVITHHEDAFIHLMNLLIPNIFE |
8 | 3w3tA | 0.13 | 0.07 | 2.51 | 1.42 | CNFpred | | ---------------------------------------------------------------------------------------------LAQIRSSLLKDSIRHKLSDAIAECVQDLPAWPELLQALIESL------------------------------------------------KSGNPNFRE---------SSFRILTTVPYLITADINSILPIFQSGFTD-------------------SDNVKIAAVTAFVGYFKQ-----------------LPKSEWSKLGI---LLPSLLNSLPRFLDD-----------------------------------GKDDALASVFESLIELVELAPKLKDMFDQIIQFTDMVIK---------------------------------------------------------------------------------------------NKDLEPPARTTALELLTV-----FSENAPQMCKSNQNYGQTLVMVTLIMMTEV-EVTYDHARQALDRVALKLGGEYLAAPLFQYLQQMITSTEWRERFAAMMALSSAAEGCADVLIIPKILDMVIPLINDPHPRVQYGCCNVLGQISTDFSPFIQHDRILPALISKLTSECTSRVQTHAAAALVNFSEFASLEPYLDSLLTNLLVLLQSNKLYVQEQALTTIAFIAEAAKNKFIKYYDTLMPLLLNVLKV---------NSVLKGKCMECATLIGFAVGKEKFHE-----------------------HSQELISILVAL-DDALRSYLEQSWSRICRI |
9 | 5gm6G | 0.10 | 0.09 | 3.32 | 1.25 | MUSTER | | LGGQYSIPQDLRENLQKEAARIGENEKDVLQEKMETRTVQNREDSYHKRDMKFELNKDEKKERTLKIKNGNTASRRTSMRITDKAVTFGPEMIFNRLLPILLDRSLEDQERHLMIKTID--RVLYQL----------GDLTKPYVHKILVVAAPLLIDEDPMVRSTGQEIITNLSTVAGLKTILTV--MRPDIENEDEYVRNVTSRAAAVVAKALG-VNQLLPFINAACHSRKS------------------WKARHTGIKIVQQIGILLG-----------------------IGVLNHLTGLMSCIKDCLMDDHVPVRIVTLAENSYPYGIEVFNVVLEPLWKGIRSHRGKVLSSFLKAVGSMIPLPEYAGYYTTEAMRIIRREFDEMKKTILLVQKCSAVESITPKFLREEIAPEFFQKFWVRRVALDRPLNKVVTYTTVTLAKKLGCSYDKLLTPLRDEAEPFRTMAVHNLLGTADLDERLETRLIDALLIAFQEQTNSDFGAVTVSLDIRMKPFLAPIVSTILNHL-PLVRQHAADLCAILIPVIKNCHEFEMLNKLNIILYESLGEVYPEVLGSIINAMYCITSVMDLDKLINQILPTLTPILRNKHRKVEVNTIKFVGLIGKLAPTYAPPKEWMRICFELLEKSTNKEIRRSANATFGFIAEAIG----PHDVLVALLNNLKVQERQLRVCTAVAIGIVAKVCGPYN-TNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLEDALTDRDLVHRQTASNVITHLALNCSGTGHEDAFIHLMNLLIPNIFE-----TSPHAIMRILEGLEALSQA |
10 | 3vwaA2 | 0.13 | 0.02 | 0.72 | 1.06 | HHsearch | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NASHKLVPFLAIVLDLTSTNTFPVGFNDLITQSFKLPDRQVRFLLLIYLPKLIGPLSKSEISSRIYPHFIQGLTDSDATLRLQTLKTIPCIVSCLTERQLNNELLRFLAKTQ-VDSDVEIRTWTVIIISKISTILS---------------------------------------------------------------------------------------------------------------------------------------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Download alignment lists the threading program used to identify the template, and provide the 3D structure of aligned regions of threading templates (threading[1-10].pdb.gz). |
(f) | Template residues identical to query sequence are highlighted in color. |
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