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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.51 | 3p17H | 0.816 | 1.11 | 0.344 | 0.839 | 1.31 | 99P | complex1.pdb.gz | 83,123,124,217,220,235,236,237,240 |
| 2 | 0.49 | 3dd2H | 0.820 | 1.24 | 0.350 | 0.846 | 1.23 | 0G6 | complex2.pdb.gz | 83,124,214,215,216,218,220,235,236,237,240,248 |
| 3 | 0.47 | 2bvrH | 0.813 | 1.17 | 0.339 | 0.839 | 1.43 | 4CP | complex3.pdb.gz | 215,216,217,234,236,237,239,241,248,249 |
| 4 | 0.46 | 2c8wB | 0.811 | 1.13 | 0.345 | 0.835 | 1.28 | C7M | complex4.pdb.gz | 83,121,123,124,214,215,216,217,220,234,235,236,237,241,248,249,250 |
| 5 | 0.45 | 1a4wH | 0.808 | 1.11 | 0.347 | 0.832 | 1.11 | QWE | complex5.pdb.gz | 83,123,214,215,216,236,237,240,241 |
| 6 | 0.43 | 1h8iH | 0.818 | 1.15 | 0.338 | 0.843 | 1.15 | PHV | complex6.pdb.gz | 83,123,169,215,216,217,218,219,220,235,236,237,238,239,241 |
| 7 | 0.33 | 1nroH | 0.818 | 1.20 | 0.345 | 0.846 | 0.93 | III | complex7.pdb.gz | 83,169,170,220,235,237,239 |
| 8 | 0.33 | 1no9H | 0.818 | 1.15 | 0.342 | 0.843 | 1.19 | 4ND | complex8.pdb.gz | 83,215,216,220,234,235,236 |
| 9 | 0.32 | 2c93B | 0.812 | 1.11 | 0.345 | 0.835 | 0.87 | C4M | complex9.pdb.gz | 83,217,236,237 |
| 10 | 0.32 | 1umaH | 0.818 | 1.14 | 0.342 | 0.843 | 1.11 | IN2 | complex10.pdb.gz | 83,214,215,216,217,220 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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