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Template proteins with similar binding site:
Click to view | Rank | CscoreLB | PDB Hit | TM-score | RMSDa | IDENa | Cov. | BS-score | Lig. Name | Download Complex | Predicted binding site residues |
| 1 | 0.03 | 2g28A | 0.381 | 7.09 | 0.038 | 0.660 | 0.22 | TDK | complex1.pdb.gz | 223,251,259,289,335,336 |
| 2 | 0.01 | 1l8aA | 0.381 | 7.10 | 0.034 | 0.663 | 0.24 | TDP | complex2.pdb.gz | 221,223,224 |
| 3 | 0.01 | 3myrB | 0.384 | 4.45 | 0.035 | 0.494 | 0.29 | NFV | complex3.pdb.gz | 224,290,293 |
| 4 | 0.01 | 3lq4B | 0.377 | 7.11 | 0.031 | 0.657 | 0.18 | TDP | complex4.pdb.gz | 223,226,341 |
| 5 | 0.01 | 2g25B | 0.396 | 6.85 | 0.042 | 0.668 | 0.20 | TDK | complex5.pdb.gz | 223,251,335,336 |
| 6 | 0.01 | 3rgwL | 0.383 | 4.46 | 0.033 | 0.497 | 0.26 | NFU | complex6.pdb.gz | 224,339,342 |
| 7 | 0.01 | 2g25A | 0.383 | 7.09 | 0.031 | 0.668 | 0.16 | TDK | complex7.pdb.gz | 224,289,291 |
| 8 | 0.01 | 2qtcB | 0.379 | 7.10 | 0.038 | 0.657 | 0.25 | TDK | complex8.pdb.gz | 223,282,283,289,337,338 |
| 9 | 0.01 | 2qtcA | 0.380 | 7.09 | 0.031 | 0.660 | 0.28 | TDK | complex9.pdb.gz | 196,197,224,227,231,286,290 |
| 10 | 0.01 | 2g28A | 0.381 | 7.09 | 0.038 | 0.660 | 0.31 | TDK | complex10.pdb.gz | 193,194,229,232,290 |
| Click on the radio buttons to visualize predicted binding site and residues. |
(a) | CscoreLB is the confidence score of predicted binding site. CscoreLB values range in between [0-1]; where a higher score indicates a more reliable ligand-binding site prediction. |
(b) | BS-score is a measure of local similarity (sequence & structure) between template binding site and predicted binding site in the query structure. Based on large scale benchmarking analysis, we have observed that a BS-score >1 reflects a significant local match between the predicted and template binding site.
| (c) | TM-score is a measure of global structural similarity between query and template protein. |
(d) | RMSDa the RMSD between residues that are structurally aligned by TM-align. |
(e) | IDENa is the percentage sequence identity in the structurally aligned region. |
(f) | Cov. represents the coverage of global structural alignment and is equal to the number of structurally aligned residues divided by length of the query protein. |
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